Listeria monocytogenes (ID 261392) - BioProject

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Accession: PRJNA261392 ID: 261392

Listeria monocytogenes

Listeria monocytogenes Genome sequencing and assembly

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This BioProject has the goal of studying the genetic variance, with particular emphasis in the analysis of virulence factors and antibiotic resistance genes, of Listeria monocytogenes strains circulating in Italy. It has relevance both in environmental/food area and clinical fields. In

Accession	PRJNA261392
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Listeria monocytogenes[Taxonomy ID: 1639] Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Publications	Centorame P et al., "Whole-Genome Sequence of Listeria monocytogenes Serovar 4b Strain IZSAM_Lm_hs2008, Isolated from a Human Infection in Italy.", Genome Announc, 2015 Mar 5;3(2)
Submission	Registration date: 8-Sep-2015 IZSAM
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	55
WGS master	4
Genomic DNA	30
SRA Experiments	24
Protein Sequences	90594
Publications
PubMed	1
PMC	1
Other datasets
BioSample	33
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

6
22
4
32

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_000808055.1		1	SAMN03073546	IZSAM_Lm_hs2008	Listeria monocytogenes
GCA_001280245.1	LJAR00000000		SAMN04009958	IZSAM_Lm_14-16064	Listeria monocytogenes
GCA_001513695.1		1	SAMN04387840	A144	Listeria monocytogenes
GCA_001596775.2		2	SAMN04452089	IZSAM_Lm_2015TE24968	Listeria monocytogenes
GCA_001551855.1		1	SAMN04452088	2015TE19005-1355	Listeria monocytogenes
GCA_003144075.1		1	SAMN09197734	2018TE5305-1-4	Listeria monocytogenes
GCA_003045225.1		1	SAMN08693629	2016TE3773-1-1	Listeria monocytogenes
GCA_003045205.1		1	SAMN08693630	2016TE4526-1-1	Listeria monocytogenes
GCA_003045185.1		1	SAMN08693622	2016TE2013	Listeria monocytogenes
GCA_003045345.1		1	SAMN08693616	2015TE24968	Listeria monocytogenes
GCA_003045325.1		1	SAMN08693617	2015TE24980	Listeria monocytogenes
GCA_003045305.1		1	SAMN08693621	2016TE1560	Listeria monocytogenes
GCA_003045285.1		1	SAMN08693623	2016TE2143	Listeria monocytogenes
GCA_003045255.1		1	SAMN08693628	2016TE3770-1-1	Listeria monocytogenes
GCA_003045625.1		1	SAMN08693612	2015TE17781-7	Listeria monocytogenes
GCA_003045605.1		1	SAMN08693613	2015TE17781-8	Listeria monocytogenes
GCA_003045585.1		1	SAMN08693620	2015TE34286	Listeria monocytogenes
GCA_003045565.1		1	SAMN08693624	2016TE337	Listeria monocytogenes
GCA_003045545.1		1	SAMN08693627	2016TE3767-1-1	Listeria monocytogenes
GCA_003045525.1		1	SAMN08693625	2016TE340	Listeria monocytogenes
GCA_003045505.1		1	SAMN08693626	2016TE3765-1-1	Listeria monocytogenes
GCA_003045485.1		1	SAMN08693631	2016TE4965-1-1	Listeria monocytogenes
GCA_003045465.1		1	SAMN08693632	2016TE840-1-1	Listeria monocytogenes
GCA_003045445.1		1	SAMN08693608	2015TE17781-3	Listeria monocytogenes
GCA_003045425.1		1	SAMN08693610	2015TE17781-5	Listeria monocytogenes
GCA_003045405.1		1	SAMN08693611	2015TE17781-6	Listeria monocytogenes
GCA_003045385.1		1	SAMN08693614	2015TE17781-9	Listeria monocytogenes
GCA_003045365.1		1	SAMN08693615	2015TE22590	Listeria monocytogenes
GCA_003020665.1	PYGO00000000		SAMN08693619	2015TE32263	Listeria monocytogenes
GCA_003020645.1	PYGQ00000000		SAMN08693609	2015TE17781-4	Listeria monocytogenes
GCA_003020625.1	PYGP00000000		SAMN08693618	2015TE27043	Listeria monocytogenes
GCA_013122235.1		1	SAMN14896270	2017-TE-6913-1	Listeria monocytogenes

SRA Data Details

Parameter	Value
Data volume, Gbases	28
Data volume, Mbytes	12703

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Listeria monocytogenes Genome sequencing and assembly

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