Brachypodium distachyon strain:Bd21 (ID 32607) - BioProject

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Accession: PRJNA32607 ID: 32607

Brachypodium distachyon strain:Bd21 (stiff brome)

Brachypodium distachyon strain:Bd21 Genome sequencing and assembly

See Genome Information for Brachypodium distachyon

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3092 additional projects are related by organism.

Brachypodium distachyon is recognized as a new model species for comparative and functional genomics of cereals and bioenergy crops. Using strain Bd21 as the source of DNA, a WGS project was performed at the DOE Joint Genome Institute.

Accession	PRJNA32607
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Brachypodium distachyon[Taxonomy ID: 15368] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium; Brachypodium distachyon
Publications (total 6) Less...	International Brachypodium Initiative "Genome sequencing and analysis of the model grass Brachypodium distachyon.", Nature, 2010 Feb 11;463(7282):763-8 More... International Brachypodium Initiative "Genome sequencing and analysis of the model grass Brachypodium distachyon.", Nature, 2010 Feb 11;463(7282):763-8 Gu YQ et al., "A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.", BMC Genomics, 2009 Oct 27;10:496 Wolny E et al., "Comparative cytogenetic analysis of the genomes of the model grass Brachypodium distachyon and its close relatives.", Ann Bot, 2009 Oct;104(5):873-81 Kumar S et al., "Orthology between genomes of Brachypodium, wheat and rice.", BMC Res Notes, 2009 May 27;2:93 Huo N et al., "Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.", Plant Mol Biol, 2009 May;70(1-2):47-61 Bortiri E et al., "The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes.", BMC Res Notes, 2008 Jul 31;1:61 Less...
Submission	Registration date: 10-Feb-2010 The International Brachypodium Initiative - JGI-PGF - JGI
Related Resources	DOE-JGI modelcrop.org BrachyBase bEST

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	20
WGS master	1
SRA Experiments	125
Capillary Traces (Trace Archive)	1
Protein Sequences	52972
Publications
PubMed	6
PMC	4
Other datasets
BioSample	31
Assembly	1

Genome assemblies, organelles and plasmids:

Assembly GCA_000005505.4 :

Name	RefSeq	GenBank
Chromosome	NC_016131.3	CM000880.3
Chromosome	NC_016132.3	CM000881.3
Chromosome	NC_016133.3	CM000882.3
Chromosome	NC_016134.3	CM000883.3
Chromosome	NC_016135.3	CM000884.3
Whole Genome Shotgun Assembly		ADDN00000000

SRA Data Details

Parameter	Value
Data volume, Gbases	648
Data volume, Tbytes	0.58

Related RefSeq Project

PRJNA74771 : Refseq Genome

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Brachypodium distachyon strain:Bd21 (stiff brome)

Brachypodium distachyon strain:Bd21 Genome sequencing and assembly

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