The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJEB43080). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
| Accession | PRJNA788898 |
| Data Type | RefSeq Genome |
| Scope | Monoisolate |
| Organism | Salmo salar[Taxonomy ID: 8030] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo; Salmo salar |
| Publications (total 3) Less... | - Ramberg S et al., "A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon.", Front Genet, 2021;12:656334
More...- Ramberg S et al., "A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon.", Front Genet, 2021;12:656334
- Micallef G et al., "Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ.", Mar Biotechnol (NY), 2012 Oct;14(5):559-69
- Leong JS et al., "Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.", BMC Genomics, 2010 Apr 30;11:279
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| Submission | Registration date: 20-Feb-2021
NORWEGIAN UNIVERSITY OF LIFE SCIENCES |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 113668 |
| Transcript | 109417 |
| Protein Sequences | 95297 |
| Publications |
| PubMed | 3 |
| PMC | 2 |
| Other datasets |
| BioSample | 1 |
| Assembly | 1 |
Related Project Category: RefseqGenbank
PRJEB43080 : Assembly of a male Atlantic salmon using long reads