Brassica oleracea var. oleracea strain:TO1000 (ID 293438) - BioProject

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Accession: PRJNA293438 ID: 293438

Brassica oleracea var. oleracea strain:TO1000

Brassica oleracea var. oleracea strain:TO1000 RefSeq Genome sequencing

See Genome Information for Brassica oleracea

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144 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA217459). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA293438
Data Type	RefSeq Genome sequencing
Scope	Multiisolate
Organism	Brassica oleracea var. oleracea[Taxonomy ID: 109376] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea
Publications (total 5) Less...	Parkin IA et al., "Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.", Genome Biol, 2014 Jun 10;15(6):R77 More... Parkin IA et al., "Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.", Genome Biol, 2014 Jun 10;15(6):R77 Liu MS et al., "Molecular and functional characterization of broccoli EMBRYONIC FLOWER 2 genes.", Plant Cell Physiol, 2012 Jul;53(7):1217-31 Chang S et al., "Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica.", BMC Genomics, 2011 Oct 11;12:497 Ostergaard J et al., "Isolation of a cDNA coding for L-galactono-gamma-lactone dehydrogenase, an enzyme involved in the biosynthesis of ascorbic acid in plants. Purification, characterization, cDNA cloning, and expression in yeast.", J Biol Chem, 1997 Nov 28;272(48):30009-16 Lowe TM et al., "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.", Nucleic Acids Res, 1997 Mar 1;25(5):955-64 Less...
Submission	Registration date: 22-May-2014 CanSeq - AAFC-NRC - National Research Council of Canada - Agricultural and Agri-Food Canada
Relevance	Agricultural
Locus Tag Prefix	AMK41

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	99535
Transcript	66641
Protein Sequences	56610
Publications
PubMed	5
PMC	4
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_000695525.1	Chromosome	JJMF00000000	10	SAMN02584321	Brassica oleracea var. oleracea

Related GenBank Project

PRJNA217459 : Brassica oleracea var. oleracea strain:TO1000 Genome sequencing and assembly

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Brassica oleracea var. oleracea strain:TO1000

Brassica oleracea var. oleracea strain:TO1000 RefSeq Genome sequencing

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