Escherichia coli (ID 266657) - BioProject

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Accession: PRJNA266657 ID: 266657

Escherichia coli

Escherichia coli multidrug-resistant sequencing

See Genome Information for Escherichia coli

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9218 additional projects are related by organism.

The purpose of this study was to sequence multidrug-resistant E. coli farm isolates, and identify genetic determinants contributing to resistance.

Accession	PRJNA266657
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Tyson GH et al., "WGS accurately predicts antimicrobial resistance in Escherichia coli.", J Antimicrob Chemother, 2015 Oct;70(10):2763-9
Submission	Registration date: 7-Dec-2014 FDA
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	13472
WGS master	76
SRA Experiments	76
Protein Sequences	373860
Publications
PubMed	1
Other datasets
BioSample	76
Assembly	76

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

76
76

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_000798595.1	JUDM00000000	SAMN03177621	CVM N33601PS	Escherichia coli
GCA_000798575.1	JUCJ00000000	SAMN03177665	CVM N36404PS	Escherichia coli
GCA_000798555.1	JUCD00000000	SAMN03177672	CVM N36903PS	Escherichia coli
GCA_000798535.1	JUCE00000000	SAMN03177671	CVM N36837PS	Escherichia coli
GCA_000798515.1	JUDN00000000	SAMN03177619	CVM N33561PS	Escherichia coli
GCA_000798495.1	JUCC00000000	SAMN03177673	CVM N36918PS	Escherichia coli
GCA_000798475.1	JUCQ00000000	SAMN03177657	CVM N36204PS	Escherichia coli
GCA_000798455.1	JUCR00000000	SAMN03177656	CVM N36158PS	Escherichia coli
GCA_000798435.1	JUDG00000000	SAMN03177629	CVM N33719PS	Escherichia coli
GCA_000798415.1	JUCU00000000	SAMN03177648	CVM N34557PS	Escherichia coli
GCA_000798395.1	JUCV00000000	SAMN03177647	CVM N34543PS	Escherichia coli
GCA_000798375.1	JUBU00000000	SAMN03177685	CVM N38826PS	Escherichia coli
GCA_000798355.1	JUDH00000000	SAMN03177628	CVM N33707PS	Escherichia coli
GCA_000798335.1	JUDI00000000	SAMN03177627	CVM N33687PS	Escherichia coli
GCA_000798315.1	JUDL00000000	SAMN03177623	CVM N33633PS	Escherichia coli
GCA_000798295.1	JUDJ00000000	SAMN03177625	CVM N33651PS	Escherichia coli
GCA_000798275.1	JUDK00000000	SAMN03177624	CVM N33640PS	Escherichia coli
GCA_000798255.1	JUCS00000000	SAMN03177653	CVM N36093PS	Escherichia coli
GCA_000798235.1	JUCF00000000	SAMN03177670	CVM N36834PS	Escherichia coli
GCA_000798215.1	JUCG00000000	SAMN03177669	CVM N36620PS	Escherichia coli
GCA_000798195.1	JUDF00000000	SAMN03177631	CVM N33742PS	Escherichia coli
GCA_000798175.1	JUBP00000000	SAMN03177690	CVM N41586PS	Escherichia coli
GCA_000798155.1	JUCZ00000000	SAMN03177640	CVM N34077PS	Escherichia coli
GCA_000798135.1	JUDA00000000	SAMN03177639	CVM N34054PS	Escherichia coli
GCA_000798115.1	JUCN00000000	SAMN03177661	CVM N36393PS	Escherichia coli
GCA_000798095.1	JUCO00000000	SAMN03177660	CVM N36312PS	Escherichia coli
GCA_000798075.1	JUDC00000000	SAMN03177635	CVM N33849PS	Escherichia coli
GCA_000798055.1	JUDB00000000	SAMN03177637	CVM N33922PS	Escherichia coli
GCA_000798035.1	JUCW00000000	SAMN03177646	CVM N34352PS	Escherichia coli
GCA_000798015.1	JUCX00000000	SAMN03177645	CVM N34351PS	Escherichia coli
GCA_000797995.1	JUCH00000000	SAMN03177668	CVM N36613PS	Escherichia coli
GCA_000797975.1	JUCI00000000	SAMN03177667	CVM N36609PS	Escherichia coli
GCA_000797955.1	JUCL00000000	SAMN03177663	CVM N36400PS	Escherichia coli
GCA_000797935.1	JUCM00000000	SAMN03177662	CVM N36396PS	Escherichia coli
GCA_000797915.1	JUBR00000000	SAMN03177688	CVM N41498PS	Escherichia coli
GCA_000797895.1	JUBS00000000	SAMN03177687	CVM N38834PS	Escherichia coli
GCA_000797875.1	JUBT00000000	SAMN03177686	CVM N38833PS	Escherichia coli
GCA_000797855.1	JUDD00000000	SAMN03177633	CVM N33806PS	Escherichia coli
GCA_000797835.1	JUDE00000000	SAMN03177632	CVM N33804PS	Escherichia coli
GCA_000797815.1	JUBQ00000000	SAMN03177689	CVM N41556PS	Escherichia coli
GCA_000797795.1	JUCT00000000	SAMN03177649	CVM N34562PS	Escherichia coli
GCA_000797775.1	JUCY00000000	SAMN03177644	CVM N34322PS	Escherichia coli
GCA_000797755.1	JUDP00000000	SAMN03177616	CVM N33443PS	Escherichia coli
GCA_000797735.1	JUDO00000000	SAMN03177617	CVM N33552PS	Escherichia coli
GCA_000797715.1	JUBW00000000	SAMN03177682	CVM N38795PS	Escherichia coli
GCA_000797695.1	JUBX00000000	SAMN03177681	CVM N38733PS	Escherichia coli
GCA_000797675.1	JUBY00000000	SAMN03177680	CVM N38663PS	Escherichia coli
GCA_000797655.1	JUCK00000000	SAMN03177664	CVM N36401PS	Escherichia coli
GCA_000797585.1	JUCA00000000	SAMN03177675	CVM N37059PS	Escherichia coli
GCA_000797595.1	JUCP00000000	SAMN03177659	CVM N36225PS	Escherichia coli
GCA_000797575.1	JUBZ00000000	SAMN03177676	CVM N37067PS	Escherichia coli
GCA_000797605.1	JUCB00000000	SAMN03177674	CVM N36963PS	Escherichia coli
GCA_000800495.1	JUBV00000000	SAMN03177684	CVM N38823PS	Escherichia coli
GCA_000831335.1	JXUL00000000	SAMN03177641	CVM N34086PS	Escherichia coli
GCA_000819375.1	JWZR00000000	SAMN03177615	CVM N33429PS	Escherichia coli
GCA_000819355.1	JWZQ00000000	SAMN03177618	CVM N33574PS	Escherichia coli
GCA_000819345.1	JWZP00000000	SAMN03177620	CVM N33591PS	Escherichia coli
GCA_000819325.1	JWYY00000000	SAMN03177678	CVM N38381PS	Escherichia coli
GCA_000819305.1	JWZD00000000	SAMN03177654	CVM N36099PS	Escherichia coli
GCA_000819365.1	JWZN00000000	SAMN03177626	CVM N33653PS	Escherichia coli
GCA_000819285.1	JWYW00000000	SAMN03177683	CVM N38796PS	Escherichia coli
GCA_000819265.1	JWYX00000000	SAMN03177679	CVM N38428PS	Escherichia coli
GCA_000819245.1	JWYZ00000000	SAMN03177677	CVM N37069PS	Escherichia coli
GCA_000819225.1	JWZA00000000	SAMN03177666	CVM N36601PS	Escherichia coli
GCA_000819205.1	JWZB00000000	SAMN03177658	CVM N36210PS	Escherichia coli
GCA_000819185.1	JWZC00000000	SAMN03177655	CVM N36113PS	Escherichia coli
GCA_000819165.1	JWZE00000000	SAMN03177652	CVM N35912PS	Escherichia coli
GCA_000819145.1	JWZF00000000	SAMN03177651	CVM N34577PS	Escherichia coli
GCA_000819125.1	JWZG00000000	SAMN03177650	CVM N34564PS	Escherichia coli
GCA_000819105.1	JWZM00000000	SAMN03177630	CVM N33720PS	Escherichia coli
GCA_000819085.1	JWZO00000000	SAMN03177622	CVM N33624PS	Escherichia coli
GCA_000819065.1	JWZH00000000	SAMN03177643	CVM N34228PS	Escherichia coli
GCA_000819005.1	JWZL00000000	SAMN03177634	CVM N33825PS	Escherichia coli
GCA_000818995.1	JWZI00000000	SAMN03177642	CVM N34152PS	Escherichia coli
GCA_000819015.1	JWZJ00000000	SAMN03177638	CVM N33978PS	Escherichia coli
GCA_000818985.1	JWZK00000000	SAMN03177636	CVM N33857PS	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	31
Data volume, Mbytes	20128

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Escherichia coli

Escherichia coli multidrug-resistant sequencing

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