Rhizopus delemar RA 99-880 (ID 13066) - BioProject

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Accession: PRJNA13066 ID: 13066

Rhizopus delemar RA 99-880

WGS sequencing and assembly of strain RA 99-880

See Genome Information for Rhizopus delemar

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8 additional projects are related by organism.

The Broad Institute sequenced the RRhizopus delemar strain RA 99-880 genome at 10X coverage using whole genome shotgun (WGS) sequencing. Rhizopus delemar strain RA 99-880, isolated from a fatal case of mucormycosis, is the first zygomycetes fungus to be sequenced.

Accession	PRJNA13066
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Rhizopus delemar RA 99-880[Taxonomy ID: 246409] Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Mucorineae; Rhizopodaceae; Rhizopus; Rhizopus delemar; Rhizopus delemar RA 99-880
Publications	Ma LJ et al., "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.", PLoS Genet, 2009 Jul;5(7):e1000549
Submission	Registration date: 17-Mar-2005 Broad Institute
Related Resources	GOLD Broad Institute: annotation CBS-KNAW: strain RA 99-880
Relevance	Medical
Locus Tag Prefix	RO3G

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	84
WGS master	1
SRA Experiments	42
Protein Sequences	17459
Publications
PubMed	1
PMC	1
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	BioSample	Taxonomy
GCA_000149305.1	Scaffold	AACW00000000	SAMN02953598	Rhizopus delemar RA 99-880

SRA Data Details

Parameter	Value
Data volume, Gbases	32
Data volume, Mbytes	15249

Related RefSeq Project

PRJNA1151041 : Rhizopus delemar RA 99-880 RefSeq Genome

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Related Resources

GOLD
GOLD
Broad Institute: annotation
Broad Institute: annotation
CBS-KNAW: strain RA 99-880
CBS-KNAW: strain RA 99-880

LinkOut to external resources

GOLD: Gp0002678 [Genomes On Line Database]
GOLD: Gp0002678
Genomes On Line Database
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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Rhizopus delemar RA 99-880
Rhizopus delemar RA 99-880
WGS sequencing and assembly of strain RA 99-880

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