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Accession: PRJNA1113402 ID: 1113402

Using Host-Responses and Pathogen Genomics to Improve Diagnostics for Tuberculosis in the Philippines

In this project, we tackle the pressing challenge of TB diagnosis in the country. More...
AccessionPRJNA1113402
Data TypeGenome sequencing
ScopeMultispecies
SubmissionRegistration date: 20-May-2024
Research Institute for Tropical Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)73
WGS master67
Genomic DNA6
SRA Experiments146
Protein Sequences23503
Other datasets
BioSample73
Assembly73
Assembly details:
Assembly levelNumber of Assemblies
6
67
73
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_040151515.1ContigJBEFMU000000000
SAMN41453987
H-21-0028
GCA_040151535.1ContigJBEFMV000000000
SAMN41454014
TH-21-5150
GCA_040151495.1ContigJBEFMW000000000
SAMN41454017
TH-21-6668
GCA_040151965.1ContigJBEFMH000000000
SAMN41453948
H-19-0011
GCA_040151905.1ContigJBEFMI000000000
SAMN41453949
H-19-0013
GCA_040151885.1ContigJBEFMJ000000000
SAMN41453950
H-19-0016
GCA_040151865.1ContigJBEFMK000000000
SAMN41453951
H-19-0018
GCA_040151825.1ContigJBEFML000000000
SAMN41453952
H-19-0019
GCA_040151795.1ContigJBEFMM000000000
SAMN41453953
H-19-0022
GCA_040151705.1ContigJBEFMO000000000
SAMN41453960
H-20-0027
GCA_040151685.1ContigJBEFMN000000000
SAMN41453959
H-20-0026
GCA_040151645.1ContigJBEFMR000000000
SAMN41453984
H-21-0023
GCA_040151625.1ContigJBEFMP000000000
SAMN41453964
H-20-0033
GCA_040151605.1ContigJBEFMQ000000000
SAMN41453979
H-21-0014
GCA_040151585.1ContigJBEFMT000000000
SAMN41453986
H-21-0027
GCA_040151565.1ContigJBEFMS000000000
SAMN41453985
H-21-0026
GCA_040063635.1ContigJBDZXK000000000
SAMN41453999
TH-20-0894
GCA_040062895.1ContigJBDZXV000000000
SAMN41454010
TH-21-1986
GCA_040062905.1ContigJBDZXT000000000
SAMN41454008
TH-20-8063
GCA_040062875.1ContigJBDZXS000000000
SAMN41454007
TH-20-7980
GCA_040062845.1ContigJBDZXP000000000
SAMN41454004
TH-20-6403
GCA_040062835.1ContigJBDZXR000000000
SAMN41454006
TH-20-7603
GCA_040063845.1ContigJBDZWF000000000
SAMN41453957
H-20-0023
GCA_040063835.1ContigJBDZWH000000000
SAMN41453962
H-20-0031
GCA_040063815.1ContigJBDZWL000000000
SAMN41453967
H-21-0001
GCA_040063775.1ContigJBDZWG000000000
SAMN41453961
H-20-0028
GCA_040063755.1ContigJBDZWI000000000
SAMN41453963
H-20-0032
GCA_040063735.1ContigJBDZWE000000000
SAMN41453955
H-20-0007
GCA_040063705.1ContigJBDZWM000000000
SAMN41453968
H-21-0002
GCA_040063695.1ContigJBDZWJ000000000
SAMN41453965
H-20-0035
GCA_040063675.1ContigJBDZWQ000000000
SAMN41453972
H-21-0006
GCA_040063645.1ContigJBDZXX000000000
SAMN41454012
TH-21-3000
GCA_040063615.1ContigJBDZWR000000000
SAMN41453973
H-21-0008
GCA_040063595.1ContigJBDZXY000000000
SAMN41454013
TH-21-3511
GCA_040063545.1ContigJBDZYB000000000
SAMN41454018
TH-21-7070
GCA_040063565.1ContigJBDZXW000000000
SAMN41454011
TH-21-1987
GCA_040063535.1ContigJBDZXZ000000000
SAMN41454015
TH-21-6666
GCA_040063515.1ContigJBDZXU000000000
SAMN41454009
TH-21-1035
GCA_040063495.1ContigJBDZXQ000000000
SAMN41454005
TH-20-6620
GCA_040063475.1ContigJBDZWO000000000
SAMN41453970
H-21-0004
GCA_040063425.1ContigJBDZWV000000000
SAMN41453978
H-21-0013
GCA_040063415.1ContigJBDZYA000000000
SAMN41454016
TH-21-6667
GCA_040063405.1ContigJBDZWS000000000
SAMN41453974
H-21-0009
GCA_040063395.1ContigJBDZWK000000000
SAMN41453966
H-20-0036
GCA_040063365.1ContigJBDZWP000000000
SAMN41453971
H-21-0005
GCA_040063325.1ContigJBDZWN000000000
SAMN41453969
H-21-0003
GCA_040063305.1ContigJBDZWX000000000
SAMN41453981
H-21-0016
GCA_040063295.1ContigJBDZWW000000000
SAMN41453980
H-21-0015
GCA_040063315.1ContigJBDZWT000000000
SAMN41453975
H-21-0010
GCA_040063275.1ContigJBDZXA000000000
SAMN41453989
TH-19-3712
GCA_040063205.1ContigJBDZXB000000000
SAMN41453990
TH-19-3928
GCA_040063215.1ContigJBDZXG000000000
SAMN41453995
TH-19-5553
GCA_040063195.1ContigJBDZXC000000000
SAMN41453991
TH-19-4055
GCA_040063225.1ContigJBDZWY000000000
SAMN41453982
H-21-0017
GCA_040063135.1ContigJBDZXJ000000000
SAMN41453998
TH-20-0138
GCA_040063175.1ContigJBDZXD000000000
SAMN41453992
TH-19-4279
GCA_040063145.1ContigJBDZXI000000000
SAMN41453997
TH-19-6143
GCA_040063075.1ContigJBDZXH000000000
SAMN41453996
TH-19-5810
GCA_040063095.1ContigJBDZXM000000000
SAMN41454001
TH-20-1044
GCA_040063085.1ContigJBDZXE000000000
SAMN41453993
TH-19-4361
GCA_040063055.1ContigJBDZXF000000000
SAMN41453994
TH-19-5082
GCA_040063005.1ContigJBDZXN000000000
SAMN41454002
TH-20-1707
GCA_040062995.1ContigJBDZWU000000000
SAMN41453976
H-21-0011
GCA_040062975.1ContigJBDZXO000000000
SAMN41454003
TH-20-1708
GCA_040062985.1ContigJBDZWZ000000000
SAMN41453988
TH-19-3424
GCA_040062955.1ContigJBDZXL000000000
SAMN41454000
TH-20-0895
GCA_040226055.1ContigJBEHBX000000000
SAMN41453977
H-21-0012
GCA_040209395.1Complete genomeSAMN41453983
H-21-0019
GCA_040209325.1Complete genomeSAMN41453958
H-20-0024
GCA_040209215.1Complete genomeSAMN41453956
H-20-0022
GCA_040209205.1Complete genomeSAMN41453954
H-19-0027
GCA_040208995.1Complete genomeSAMN41453947
H-19-0008
GCA_040208985.1Complete genomeSAMN41453946
H-19-0007
SRA Data Details
ParameterValue
Data volume, Gbases43
Data volume, Mbytes34404

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