ID 607328 - BioProject

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Accession: PRJNA607328 ID: 607328

Whole-genome sequencing of bacteria, fungi, plants, and metagenomes

See Genome Information for Citrobacter freundii

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166 additional projects are related by organism.

Species and metagenomic samples used for the FELIX (Finding Engineering-Linked Indicators) project.

Accession	PRJNA607328
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Wan KH et al., "Complete Genome Sequence of the Citrobacter freundii Type Strain.", Microbiol Resour Announc, 2020 May 7;9(19) Published online: Wan K et al., "Complete Genome Sequence of the Citrobacter freundii Type Strain", Microbiology Resource Announcements, 2020;9(19)
Submission	Registration date: 5-Mar-2020 Lawrence Berkeley National Laboratory

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	597
WGS master	25
Genomic DNA	404
SRA Experiments	594
Protein Sequences	302258
Publications
PubMed	1
PMC	1
Other datasets
BioSample	290
Assembly	127

Assembly details:

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Assembly level

Number of Assemblies

91
31
1
4
127

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_024507855.1		2	SAMN29939565	BDGP7	Bacillus altitudinis
GCA_037414465.1		1	SAMN40298358	168	Bacillus subtilis subsp. subtilis str. 168
GCA_037751545.1		2	SAMN40298371	FELIX_MS509	Bacillus subtilis
GCA_037755145.1		2	SAMN40298365	FELIX_MS521	Bacillus subtilis
GCA_037754115.1		2	SAMN40298369	FELIX_MS513	Bacillus subtilis
GCA_037753205.1		2	SAMN40298368	FELIX_MS512	Bacillus subtilis
GCA_037749985.1		2	SAMN40298367	FELIX_MS506	Bacillus subtilis
GCA_037749255.1		2	SAMN40298366	FELIX_MS504	Bacillus subtilis
GCA_037747845.1		2	SAMN40298370	FELIX_MS499	Bacillus subtilis
GCA_037742535.1		1	SAMN40298357	FELIX_MS438	Bacillus subtilis subsp. subtilis
GCA_037740765.1		1	SAMN40298361	FELIX_MS361	Bacillus subtilis subsp. subtilis
GCA_037757895.1		3	SAMN40298362	FELIX_MS620	Bacillus subtilis
GCA_037914925.1		2	SAMN40298372	DSM 10	Bacillus subtilis
GCA_040008305.1		1	SAMN41494449	FELIX_MS22	Bacillus subtilis subsp. subtilis
GCA_040008285.1		2	SAMN41494448	FELIX_MS21	Bacillus subtilis subsp. subtilis
GCA_039917025.1		1	SAMN41494447	FELIX_MS9	Bacillus subtilis subsp. subtilis
GCA_034377505.1		1	SAMN37931206	FELIX_MS255	Bacillus subtilis
GCA_033403035.1		1	SAMN37709338	FELIX_MS886	Bacillus subtilis
GCA_033392095.1		1	SAMN37709337	FELIX_MS382	Bacillus subtilis
GCA_032681245.1		1	SAMN37648158	168	Bacillus subtilis subsp. subtilis str. 168
GCA_024507835.1		1	SAMN29939554	BGSC 10A5	Bacillus subtilis subsp. subtilis
GCA_024507815.1		3	SAMN29939557	Bacillus subtilis 'natto'	Bacillus subtilis subsp. natto
GCA_024507895.1		1	SAMN29939553	BGSC 10A5	Bacillus subtilis
GCA_024508095.1		1	SAMN29939555	RUB331	Bacillus subtilis
GCA_024508195.1		1	SAMN29939556	BGSC 27E1	Bacillus subtilis subsp. natto
GCA_024508175.1		1	SAMN29939552	BGSC b98af	Bacillus subtilis
GCA_037820925.1		1	SAMN40298374	FELIX_MS426	Citrobacter freundii
GCA_034377565.1		1	SAMN37931207	FELIX_MS432	Citrobacter freundii
GCA_033399635.1		1	SAMN37709340	FELIX_MS690	Citrobacter freundii
GCA_033398815.1		2	SAMN37709339	FELIX_MS689	Citrobacter freundii
GCA_011064845.1		1	SAMN14128751	ATCC 8090	Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681
GCA_040105135.1		2	SAMN41494450	FELIX_MS238	Escherichia coli
GCA_039926885.1		2	SAMN41494457	FELIX_MS490	Escherichia coli
GCA_041080855.1		2	SAMN41934464	FELIX_MS516	Escherichia coli
GCA_037752355.1		1	SAMN40298379	FELIX_MS510	Escherichia coli
GCA_037750835.1		1	SAMN40298376	FELIX_MS508	Escherichia coli
GCA_037744325.1		3	SAMN40298380	Nissle	Escherichia coli
GCA_037756885.1		1	SAMN40298378	FELIX_MS59	Escherichia coli
GCA_037760445.1		1	SAMN40298377	FELIX_MS78	Escherichia coli
GCA_037759535.1		1	SAMN40298375	FELIX_MS75	Escherichia coli
GCA_032681165.1		1	SAMN37648159	DCM188-6	Escherichia coli
GCA_032681145.1		1	SAMN37648161	DCM200-113	Escherichia coli
GCA_032681125.1		1	SAMN37648160	DCM272-43-68	Escherichia coli
GCA_033402235.1		1	SAMN37709344	FELIX_MS772	Escherichia coli
GCA_033400515.1		4	SAMN37709342	FELIX_MS724	Escherichia coli
GCA_033401435.1		2	SAMN37709343	FELIX_MS771	Escherichia coli
GCA_033395675.1		4	SAMN37709341	FELIX_MS533	Escherichia coli
GCA_024508155.1		5	SAMN29939549	Seattle 1946	Escherichia coli
GCA_024507875.1		3	SAMN29939562	JCC-EE 7	Escherichia coli
GCA_024507935.1		1	SAMN29939558	QA-1986 83	Escherichia coli
GCA_024508055.1		5	SAMN29939563	Evo1	Escherichia coli
GCA_024508035.1		1	SAMN29939567	QA-1986 630	Escherichia coli
GCA_040938385.1	JBCLPD000000000	3	SAMN40298382	FEB544	Komagataella pastoris
GCA_040938465.1	JBCLPE000000000	3	SAMN40298383	X-33 (Thermo)	Komagataella pastoris
GCA_040938455.1	JBCLPF000000000	4	SAMN40298381	Phaff 60-58	Komagataella pastoris
GCA_024507975.1		1	SAMN29939559	QA-1986 374	Oceanobacillus jeddahense
GCA_024508135.1		1	SAMN29939560	QA-1986 526	Oceanobacillus oncorhynchi
GCA_040008295.1		1	SAMN41494451	mPAO1	Pseudomonas aeruginosa
GCA_039924275.1		1	SAMN41494456	PAO1F_delta_fleQ	Pseudomonas aeruginosa
GCA_039921825.1		1	SAMN41494452	mPAO1:PA4308	Pseudomonas aeruginosa
GCA_039919425.1		1	SAMN41494455	PAO1DF	Pseudomonas aeruginosa
GCA_037914935.1		1	SAMN40298384	FELIX_MS413	Pseudomonas aeruginosa
GCA_032681185.1		1	SAMN37648162	UO299	Pseudomonas aeruginosa
GCA_033392255.1		1	SAMN37709345	PAO1F	Pseudomonas aeruginosa
GCA_033394235.1		1	SAMN37709347	FELIX_MS461	Pseudomonas aeruginosa
GCA_033393195.1		1	SAMN37709346	FELIX_MS457	Pseudomonas aeruginosa
GCA_033395015.1		1	SAMN37709348	FELIX_MS463	Pseudomonas aeruginosa
GCA_024507915.1		1	SAMN29939564	NWRC-1223	Pseudomonas aeruginosa
GCA_024507955.1		1	SAMN29939566	ATCC 27853	Pseudomonas aeruginosa
GCA_040516015.1		1	SAMN41934465	DOT-T1E	Pseudomonas putida DOT-T1E
GCA_040516005.1		1	SAMN40298387	KT2440	Pseudomonas putida
GCA_037758665.1		1	SAMN40298385	FELIX_MS641	Pseudomonas putida
GCA_037756035.1		1	SAMN40298386	FELIX_MS547	Pseudomonas putida
GCA_032681205.1		1	SAMN37648163	mt-2	Pseudomonas putida
GCA_033396375.1		1	SAMN37709349	FELIX_MS682	Pseudomonas putida
GCA_033397055.1		1	SAMN37709351	FELIX_MS684	Pseudomonas putida
GCA_033397795.1		1	SAMN37709350	FELIX_MS683	Pseudomonas putida
GCA_024508115.1		1	SAMN29939550	ATCC 12633	Pseudomonas putida
GCA_037126745.1	JAXUAW000000000		SAMN37931208	IF0880	Rhodotorula toruloides
GCA_037126565.1	JAXUAX000000000		SAMN37931209	IF0880	Rhodotorula toruloides
GCA_037126585.1	JAXUAY000000000		SAMN37931210	IF0880	Rhodotorula toruloides
GCA_040938645.1	JBEFDP000000000	17	SAMN37931219	301.10a	Saccharomyces cerevisiae
GCA_040938625.1	JBEFDO000000000	17	SAMN37931218	LG811-9A	Saccharomyces cerevisiae
GCA_040938615.1	JBEFDN000000000	17	SAMN37931217	MEC4006	Saccharomyces cerevisiae
GCA_040938635.1	JBEFDM000000000	17	SAMN37931214	BY4742	Saccharomyces cerevisiae
GCA_040938605.1	JBEFDL000000000	17	SAMN37931211	BY4742	Saccharomyces cerevisiae
GCA_040747045.1		18	SAMN41934462	FELIX_MS253	Saccharomyces cerevisiae
GCA_040746905.1		16	SAMN41934460	FELIX_MS184	Saccharomyces cerevisiae
GCA_040500495.1		17	SAMN41934461	M22	Saccharomyces cerevisiae
GCA_039844365.1		18	SAMN40298390	FELIX_ MS142	Saccharomyces cerevisiae
GCA_039851885.1		17	SAMN40298388	FELIX_MS420	Saccharomyces cerevisiae
GCA_039847695.1		17	SAMN40298400	YPS163	Saccharomyces cerevisiae
GCA_039848515.1		17	SAMN40298397	Phaff 04-210	Saccharomyces cerevisiae
GCA_039851725.1		17	SAMN40298393	FELIX_MS366	Saccharomyces cerevisiae
GCA_039880175.1		17	SAMN40298389	FELIX_MS348	Saccharomyces cerevisiae
GCA_039880145.1		17	SAMN40298399	FELIX_MS185	Saccharomyces cerevisiae
GCA_039880235.1		17	SAMN40298391	FELIX_MS243	Saccharomyces cerevisiae
GCA_039880205.1		17	SAMN40298392	FELIX_MS245	Saccharomyces cerevisiae
GCA_039905835.1		17	SAMN40298398	missng	Saccharomyces cerevisiae
GCA_040105055.1		17	SAMN37931213	CEN.PK113-7D	Saccharomyces cerevisiae
GCA_040105025.1		18	SAMN37931212	BY4742	Saccharomyces cerevisiae
GCA_037126715.1	JAXUAV000000000		SAMN37931216	Phaff 40-230	Saccharomyces cerevisiae
GCA_037126535.1	JAXUAU000000000		SAMN37931215	Phaff 40-119	Saccharomyces cerevisiae
GCA_041080895.1		2	SAMN41934466	LT2	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_042997225.1		3	SAMN41934463	FELIX_MS479	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_032681265.1		2	SAMN37648166	JE4313	Salmonella enterica
GCA_033403855.1		2	SAMN37648164	FELIX_MS734	Salmonella enterica
GCA_033404635.1		2	SAMN37648165	FELIX_MS735	Salmonella enterica
GCA_034377425.1		2	SAMN37931220	FELIX_MS205	Salmonella enterica
GCA_024507995.1		3	SAMN29939568	QA-1986 974	Salmonella enterica subsp. enterica
GCA_024508075.1		3	SAMN29939561	QA-1986 973	Salmonella enterica subsp. enterica
GCA_023658665.1		2	SAMN27101937	494	Staphylococcus aureus
GCA_037746055.1		2	SAMN40298401	FELIX_MS472	Vibrio natriegens
GCA_024508015.1		2	SAMN29939551	14048	Vibrio natriegens
GCA_040104995.1		7	SAMN37931221	FEB53, TEB7.5	Yarrowia lipolytica
GCA_040939005.1	JBDLYH000000000	6	SAMN40298407	FEB380	Yarrowia lipolytica
GCA_040938955.1	JBDLYG000000000	6	SAMN40298403	FEB130	Yarrowia lipolytica
GCA_040938875.1	JBDLYF000000000	6	SAMN40298410	FEB56	Yarrowia lipolytica
GCA_040938755.1	JBDLYE000000000	5	SAMN40298408	FEB479	Yarrowia lipolytica
GCA_040938765.1	JBDLYD000000000	5	SAMN40298409	FEB488	Yarrowia lipolytica
GCA_040938865.1	JBDLYC000000000	5	SAMN40298405	FEB360	Yarrowia lipolytica
GCA_040938855.1	JBDLYB000000000	6	SAMN40298411	FEB77	Yarrowia lipolytica
GCA_043709955.1	JBIFXK000000000	7	SAMN40298414	Phaff 50-46	Yarrowia lipolytica
GCA_043709905.1	JBIHLL000000000	7	SAMN40298404	FEB318	Yarrowia lipolytica
GCA_043709925.1	JBIHLK000000000	7	SAMN40298413	FKP393	Yarrowia lipolytica
GCA_043709915.1	JBIHLJ000000000	7	SAMN40298412	FKP355	Yarrowia lipolytica
GCA_034642105.1	JAWWNC000000000	6	SAMN37931223	pex17-1	Yarrowia lipolytica

SRA Data Details

Parameter	Value
Data volume, Gbases	7,326
Data volume, Tbytes	4.60

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Whole-genome sequencing of bacteria, fungi, plants, and metagenomes

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