ID 559804 - BioProject

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Accession: PRJNA559804 ID: 559804

Characterization of antibiotic resistant enterobacteria from fresh produce in Germany

This study aimed to investigate whether food-associated enterobacteria from fresh produce may exhibit (multiple) antibiotic resistances.

Accession	PRJNA559804
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Cho GS et al., "Polyphasic study of antibiotic-resistant enterobacteria isolated from fresh produce in Germany and description of Enterobacter vonholyi sp. nov. isolated from marjoram and Enterobacter dykesii sp. nov. isolated from mung bean sprout.", Syst Appl Microbiol, 2021 Jan;44(1):126174
Submission	Registration date: 12-Aug-2019 Max Rubner-Institut
Relevance	Fresh produce

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1269
WGS master	16
Genomic DNA	36
SRA Experiments	2
Protein Sequences	118323
Publications
PubMed	1
Other datasets
BioSample	31
Assembly	31

Assembly details:

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Assembly level

Number of Assemblies

15
8
8
31

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_008364635.1	VTTV00000000		SAMN12560195	C8	Citrobacter braakii
GCA_008364705.1	VTTU00000000		SAMN12560194	C7	Citrobacter braakii
GCA_039566135.1		2	SAMN35344983	C11	Citrobacter freundii
GCA_008364725.2		3	SAMN12560192	C4	Citrobacter portucalensis
GCA_008364645.1	VTTW00000000		SAMN12560196	C10	Citrobacter portucalensis
GCA_008364895.1	VTTX00000000		SAMN12560197	C12	Citrobacter portucalensis
GCA_008364715.2		3	SAMN12560193	C5.1	Citrobacter werkmanii
GCA_008364575.2		1	SAMN12560199	E2	Enterobacter asburiae
GCA_008364625.2		1	SAMN12560198	E1	Enterobacter dykesii
GCA_008370065.2		2	SAMN12560201	E11	Enterobacter hormaechei
GCA_008364545.1	VTUD00000000		SAMN12560203	E14	Enterobacter kobei
GCA_008364565.1	VTUA00000000		SAMN12560200	E8	Enterobacter ludwigii
GCA_008364555.1	VTUC00000000		SAMN12560202	E13	Enterobacter vonholyi
GCA_008364515.2		5	SAMN12560204	Ec1115	Escherichia coli
GCA_008364455.2		2	SAMN12560206	Ec1117	Escherichia coli
GCA_008364465.2		2	SAMN12560207	Ec1119	Escherichia coli
GCA_008364435.2		2	SAMN12560208	Ec1120	Escherichia coli
GCA_008364485.1	VTUF00000000		SAMN12560205	Ec1116	Escherichia coli
GCA_008364345.1	VTUM00000000		SAMN12560212	K10	Klebsiella aerogenes
GCA_008364425.2		5	SAMN12560209	K1	Klebsiella grimontii
GCA_039566125.1		3	SAMN35344985	K8	Klebsiella pneumoniae
GCA_008364355.1	VTUL00000000		SAMN12560211	K7	Klebsiella pneumoniae
GCA_039566115.1		1	SAMN35344984	K3	Klebsiella variicola
GCA_008364395.1	VTUK00000000		SAMN12560210	K2	Klebsiella variicola
GCA_008364225.1	VTUR00000000		SAMN12560217	S13	Serratia bockelmannii
GCA_008364325.2		3	SAMN12560213	S1	Serratia liquefaciens
GCA_008364235.1	VTUT00000000		SAMN12560219	S18	Serratia marcescens
GCA_008364265.2		1	SAMN12560215	S7.1	Serratia marcescens
GCA_008364245.1	VTUS00000000		SAMN12560218	S15	Serratia nevei
GCA_008364335.1	VTUO00000000		SAMN12560214	S2	Serratia nevei
GCA_008364255.1	VTUQ00000000		SAMN12560216	S10	Serratia nevei

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	780

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Characterization of antibiotic resistant enterobacteria from fresh produce in Germany

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