Bacteria (ID 1047486) - BioProject

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Accession: PRJNA1047486 ID: 1047486

Bacteria

Genome sequencing and assembly of bacterial species from a model synthetic community

Raw sequence reads (Illumina, PacBio, Oxford Nanopore) and whole genome assemblies for 30 bacterial species from the HAMBI culture collection (University of Helsinki). More...

Accession	PRJNA1047486
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 1-Dec-2023 University of Turku
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	59
SRA Experiments	60
Protein Sequences	140389
Other datasets
BioSample	30
Assembly	30

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

30
30

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_034424475.1	3	SAMN38562697	HAMBI_0097	Acinetobacter johnsonii
GCA_034424415.1	1	SAMN38562710	HAMBI_1972	Aeromonas caviae
GCA_034424685.1	3	SAMN38562699	HAMBI 105	Agrobacterium tumefaciens
GCA_034424645.1	1	SAMN38562714	HAMBI_2160	Bordetella avium
GCA_034424665.1	1	SAMN38562700	HAMBI_0262	Brevundimonas bullata
GCA_034424705.1	1	SAMN38562696	HAMBI_0018	Brevundimonas diminuta
GCA_034424315.1	1	SAMN38562712	HAMBI_1988	Chitinophaga sancti
GCA_034424455.1	3	SAMN38562703	HAMBI_1287	Citrobacter koseri
GCA_034424235.1	2	SAMN38562701	HAMBI_0403	Comamonas testosteroni
GCA_034424395.1	2	SAMN38562715	HAMBI_2164	Cupriavidus oxalaticus
GCA_034424725.1	1	SAMN38562694	ATCC 11303	Escherichia coli
GCA_034424155.1	2	SAMN38562702	HAMBI_1279	Hafnia alvei
GCA_034424625.1	2	SAMN38562708	HAMBI_1919	Janthinobacterium lividum
GCA_034424175.1	2	SAMN38562705	HAMBI_1299	Kluyvera intermedia
GCA_034627025.1	4	SAMN38562721	HAMBI_3237	Microvirga lotononidis
GCA_034424565.1	3	SAMN38562719	HAMBI_2792	Moraxella canis
GCA_034424335.1	1	SAMN38562704	HAMBI_1292	Morganella morganii
GCA_034424295.1	1	SAMN38562709	HAMBI_1923	Myroides odoratus
GCA_034424215.1	1	SAMN38562720	HAMBI_3031	Niabella yanshanensis
GCA_034424435.1	3	SAMN38562698	HAMBI_0103	Novosphingobium capsulatum
GCA_034424375.1	2	SAMN38562717	HAMBI 2494	Paraburkholderia kururiensis
GCA_034627565.1	3	SAMN38562716	HAMBI_2443	Paracoccus denitrificans
GCA_034424585.1	1	SAMN38562711	HAMBI_1977	Pseudomonas chlororaphis
GCA_034424355.1	1	SAMN38562722	SBW25	Pseudomonas marginalis
GCA_034424745.1	1	SAMN38562695	HAMBI_0006	Pseudomonas putida
GCA_034424255.1	2	SAMN38562723	ATCC 13880	Serratia marcescens subsp. marcescens ATCC 13880
GCA_034424195.1	1	SAMN38562707	HAMBI_1896	Sphingobacterium spiritivorum
GCA_034424525.1	7	SAMN38562706	HAMBI_1842	Sphingobium yanoikuyae
GCA_034424605.1	1	SAMN38562718	HAMBI_2659	Stenotrophomonas maltophilia
GCA_034424545.1	2	SAMN38562713	HAMBI_2159	Trinickia caryophylli

SRA Data Details

Parameter	Value
Data volume, Gbases	36
Data volume, Mbytes	24986

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Bacteria

Genome sequencing and assembly of bacterial species from a model synthetic community

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