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Genome Information for Ruditapes philippinarum
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24 additional projects are components of the The Global Invertebrate Genomics Alliance (GIGA) genomes and transcriptomes.
The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA807867). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
| Accession | PRJNA1033681 |
| Data Type | RefSeq Genome sequencing |
| Scope | Monoisolate |
| Organism | Ruditapes philippinarum[Taxonomy ID: 129788] Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Ruditapes; Ruditapes philippinarum |
| Publications (total 4) Less... | - Xu R et al., "Multi-tissue RNA-Seq Analysis and Long-read-based Genome Assembly Reveal Complex Sex-specific Gene Regulation and Molecular Evolution in the Manila Clam.", Genome Biol Evol, 2022 Dec 7;14(12)
More...- Xu R et al., "Multi-tissue RNA-Seq Analysis and Long-read-based Genome Assembly Reveal Complex Sex-specific Gene Regulation and Molecular Evolution in the Manila Clam.", Genome Biol Evol, 2022 Dec 7;14(12)
- Maeda GP et al., "Relaxed selection on male mitochondrial genes in DUI bivalves eases the need for mitonuclear coevolution.", J Evol Biol, 2021 Nov;34(11):1722-1736
- Ghiselli F et al., "De Novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination.", Mol Biol Evol, 2012 Feb;29(2):771-86
- Zhang L et al., "Expression profiles of seven glutathione S-transferase (GST) genes from Venerupis philippinarum exposed to heavy metals and benzo[a]pyrene.", Comp Biochem Physiol C Toxicol Pharmacol, 2012 Apr;155(3):517-27
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| Submission | Registration date: 1-Dec-2022
University of Bologna |
| Relevance | Evolution |
| Locus Tag Prefix | R7U29 |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 80027 |
| Transcript | 64154 |
| Protein Sequences | 57624 |
| Publications |
| PubMed | 4 |
| PMC | 3 |
| Other datasets |
| BioSample | 1 |
| Assembly | 1 |
Related GenBank Project
PRJNA807867 : Ruditapes philippinarum isolate:M1 Genome sequencing and assembly