Pseudomonas (ID 788750) - BioProject

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Accession: PRJNA788750 ID: 788750

Pseudomonas

Molecular epidemiology of MBL-producing Pseudomonas putida group in Poland, 2003-2016

Project aims to characterise collection of MBL-producing strains of P. putida group, isolated in Polish hospitals between 2003 and 2016.

Accession	PRJNA788750
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Pseudomonas[Taxonomy ID: 286] Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Publications	Urbanowicz P et al., "Genomic Epidemiology of MBL-Producing Pseudomonas putida Group Isolates in Poland.", Infect Dis Ther, 2022 Aug;11(4):1725-1740
Grants	"The multilocus sequence typing (MLST) scheme for Pseudomonas putida and molecular epidemiology of metallo-beta-lactamase-producing P. putida in Poland" (Grant ID 2016/21/N/NZ7/03328, National Science Centre, Poland)
Submission	Registration date: 25-Dec-2021 National Medicines Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	59
WGS master	48
Genomic DNA	11
SRA Experiments	59
Protein Sequences	61656
Publications
PubMed	1
PMC	1
Other datasets
BioSample	59
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

11
48
59

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_021282505.1	JAJSQB000000000		SAMN23773718	NMI9276_10	Pseudomonas alloputida
GCA_021282425.1	JAJSRE000000000		SAMN23773747	NMI5033_13	Pseudomonas alloputida
GCA_021282605.1	JAJSPT000000000		SAMN23773710	NMI891_07	Pseudomonas alloputida
GCA_021282585.1	JAJSPR000000000		SAMN23773708	NMI2441_06	Pseudomonas alloputida
GCA_021282705.1	JAJSQG000000000		SAMN23773723	NMI1537_10	Pseudomonas alloputida
GCA_021282685.1	JAJSQH000000000		SAMN23773724	NMI579_11	Pseudomonas alloputida
GCA_021282805.1	JAJSQE000000000		SAMN23773721	NMI5075_10	Pseudomonas alloputida
GCA_021283195.1	JAJSRH000000000		SAMN23773750	NMI733_14	Pseudomonas alloputida
GCA_021282945.1	JAJSQT000000000		SAMN23773736	NMI6396_12	Pseudomonas alloputida
GCA_021283435.1	JAJSRL000000000		SAMN23773754	NMI3760_14	Pseudomonas alloputida
GCA_021284725.1	JAJSPO000000000		SAMN23773705	NMI2596_03	Pseudomonas alloputida
GCA_021284705.1	JAJSPP000000000		SAMN23773706	NMI2153_05	Pseudomonas alloputida
GCA_021284645.1	JAJSPQ000000000		SAMN23773707	NMI3088_05	Pseudomonas alloputida
GCA_021283515.1	JAJSRP000000000		SAMN23773758	NMI4481_15	Pseudomonas alloputida
GCA_021283485.1	JAJSRI000000000		SAMN23773751	NMI1498_14	Pseudomonas alloputida
GCA_021283545.2		1	SAMN23773755	NMI24_14	Pseudomonas alloputida
GCA_021283075.2		1	SAMN23773712	NMI5594_09	Pseudomonas alloputida
GCA_021282725.2	JAJSQD000000000		SAMN23773720	NMI2291_10	Pseudomonas alloputida
GCA_021282465.2	JAJSRF000000000		SAMN23773748	NMI5768_13	Pseudomonas alloputida
GCA_021283565.1	JAJSQX000000000		SAMN23773740	NMI4798_12	Pseudomonas asiatica
GCA_021283405.1	JAJSRN000000000		SAMN23773756	NMI537_14	Pseudomonas asiatica
GCA_021283345.1	JAJSQV000000000		SAMN23773738	NMI6466_12	Pseudomonas asiatica
GCA_021283325.1	JAJSRT000000000		SAMN23773762	NMI4147_15	Pseudomonas asiatica
GCA_021283225.1	JAJSPW000000000		SAMN23773713	NMI4837_09	Pseudomonas asiatica
GCA_021282785.1	JAJSPY000000000		SAMN23773715	NMI2869_09	Pseudomonas asiatica
GCA_021282865.1	JAJSQF000000000		SAMN23773722	NMI8332_10	Pseudomonas asiatica
GCA_021282825.1	JAJSPX000000000		SAMN23773714	NMI4695_09	Pseudomonas asiatica
GCA_021282745.1	JAJSQC000000000		SAMN23773719	NMI5519_10	Pseudomonas asiatica
GCA_021282565.2	JAJSPZ000000000		SAMN23773716	NMI6180_09	Pseudomonas asiatica
GCA_021283465.2		1	SAMN23773760	NMI3658_15	Pseudomonas asiatica
GCA_021282385.2	JAJSRQ000000000		SAMN23773759	NMI4025_15	Pseudomonas juntendi
GCA_021282905.1	JAJSQZ000000000		SAMN23773742	NMI4034_13	Pseudomonas kurunegalensis
GCA_021283255.1	JAJSRD000000000		SAMN23773746	NMI3044_13	Pseudomonas kurunegalensis
GCA_021283125.2		1	SAMN23773739	NMI3456_12	Pseudomonas kurunegalensis
GCA_021283285.1	JAJSQL000000000		SAMN23773728	NMI811_11	Pseudomonas monteilii
GCA_021283005.1	JAJSQR000000000		SAMN23773734	NMI4182_12	Pseudomonas monteilii
GCA_021283135.1	JAJSQJ000000000		SAMN23773726	NMI5622_11	Pseudomonas monteilii
GCA_021283025.1	JAJSQK000000000		SAMN23773727	NMI5219_11	Pseudomonas monteilii
GCA_021282885.1	JAJSRA000000000		SAMN23773743	NMI2219_13	Pseudomonas monteilii
GCA_021282935.1	JAJSQI000000000		SAMN23773725	NMI4421_11	Pseudomonas monteilii
GCA_021282835.1	JAJSRB000000000		SAMN23773744	NMI1259_13	Pseudomonas monteilii
GCA_021282665.1	JAJSQM000000000		SAMN23773729	NMI5530_11	Pseudomonas monteilii
GCA_021282545.1	JAJSQA000000000		SAMN23773717	NMI2188_10	Pseudomonas monteilii
GCA_021283505.1	JAJSRG000000000		SAMN23773749	NMI160_14	Pseudomonas monteilii
GCA_021282645.2		1	SAMN23773731	NMI10873_11	Pseudomonas monteilii
GCA_021282625.2		1	SAMN23773730	NMI8712_11	Pseudomonas monteilii
GCA_021283055.2		1	SAMN23773763	NMI135_16	Pseudomonas monteilii
GCA_021283365.2		1	SAMN23773737	NMI6266_12	Pseudomonas monteilii
GCA_021282525.2		1	SAMN23773709	NMI985_06	Pseudomonas monteilii
GCA_021283375.2		1	SAMN23773752	NMI4849_14	Pseudomonas mosselii
GCA_021283035.1	JAJSQQ000000000		SAMN23773733	NMI4591_12	Pseudomonas putida
GCA_021282955.1	JAJSQY000000000		SAMN23773741	NMI5241_13	Pseudomonas putida
GCA_021282365.1	JAJSRK000000000		SAMN23773753	NMI4533_14	Pseudomonas putida
GCA_021283165.2		1	SAMN23773761	NMI4264_15	Pseudomonas soli
GCA_021283105.1	JAJSQP000000000		SAMN23773732	NMI1173_11	Pseudomonas sp. NMI1173_11
GCA_021282925.1	JAJSQS000000000		SAMN23773735	NMI4491_12	Pseudomonas sp. NMI4491_12
GCA_021283425.1	JAJSRO000000000		SAMN23773757	NMI542_15	Pseudomonas sp. NMI542_15
GCA_021283245.1	JAJSRC000000000		SAMN23773745	NMI760_13	Pseudomonas sp. NMI760_13
GCA_021282765.1	JAJSPU000000000		SAMN23773711	NMI795_08	Pseudomonas sp. NMI795_08

SRA Data Details

Parameter	Value
Data volume, Gbases	56
Data volume, Mbytes	24770

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Pseudomonas

Molecular epidemiology of MBL-producing Pseudomonas putida group in Poland, 2003-2016

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