Campylobacter (ID 987883) - BioProject

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Accession: PRJDB15932 ID: 987883

Campylobacter

Genomic surveillance of Campylobacter isolates from humans in Kolkata, India

Whole genome sequence of Campylobacter isolated from diarrhea patients at two hospitals in Kolkata, India.

Accession	PRJDB15932
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Campylobacter[Taxonomy ID: 194] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter
Grants	"Emerging and re-emerging infectious diseases at overseas research centers" (Grant ID JP22wm0225012, Japan Agency for Medical Research and Development)
Submission	Registration date: 26-Jun-2023 Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1556
WGS master	53
Genomic DNA	85
SRA Experiments	175
Protein Sequences	196784
Other datasets
BioSample	112
Assembly	112

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

59
53
112

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_033128445.1		2	SAMD00620671	BCH-10307	Campylobacter coli
GCA_033129325.1		3	SAMD00620707	BCH-10879	Campylobacter coli
GCA_033130065.1		3	SAMD00620759	IDH-11999	Campylobacter coli
GCA_033130045.1		3	SAMD00620744	BCH-11568	Campylobacter coli
GCA_033242185.1	BTFN00000000		SAMD00620767	IDH-12399	Campylobacter coli
GCA_033242165.1	BTFM00000000		SAMD00620766	IDH-12384	Campylobacter coli
GCA_033242105.1	BTFJ00000000		SAMD00620762	IDH-12041	Campylobacter coli
GCA_033242075.1	BTFI00000000		SAMD00620761	IDH-12030	Campylobacter coli
GCA_033242045.1	BTFH00000000		SAMD00620760	IDH-12026	Campylobacter coli
GCA_033241985.1	BTFE00000000		SAMD00620755	IDH-11848	Campylobacter coli
GCA_033241395.1	BTES00000000		SAMD00620733	BCH-11426	Campylobacter coli
GCA_033240915.1	BTEL00000000		SAMD00620718	BCH-11033	Campylobacter coli
GCA_033240445.1	BTDW00000000		SAMD00620773	BCH-10456	Campylobacter coli
GCA_033240365.1	BTDS00000000		SAMD00620680	BCH-10425	Campylobacter coli
GCA_033097205.1		1	SAMD00620754	IDH-11847	Campylobacter coli
GCA_033097145.1		1	SAMD00620737	BCH-11476	Campylobacter coli
GCA_033097005.1		1	SAMD00620719	BCH-11051	Campylobacter coli
GCA_033096765.1		1	SAMD00620683	BCH-10460	Campylobacter coli
GCA_033096745.1		1	SAMD00620679	BCH-10420	Campylobacter coli
GCA_033096725.1		1	SAMD00620673	BCH-10328	Campylobacter coli
GCA_033096705.1		1	SAMD00620672	BCH-10312	Campylobacter jejuni
GCA_033096685.1		1	SAMD00620668	BCH-10204	Campylobacter jejuni
GCA_033096665.1		1	SAMD00620667	BCH-10190	Campylobacter jejuni
GCA_033096645.1		1	SAMD00620666	BCH-10174	Campylobacter jejuni
GCA_033096625.1		1	SAMD00620665	BCH-10172	Campylobacter jejuni
GCA_033096605.1		1	SAMD00620663	BCH-10091	Campylobacter jejuni
GCA_033096585.1		1	SAMD00620662	BCH-10089	Campylobacter jejuni
GCA_033096985.1		1	SAMD00620717	BCH-11000	Campylobacter jejuni
GCA_033096965.1		1	SAMD00620716	BCH-10998	Campylobacter jejuni
GCA_033096945.1		1	SAMD00620702	BCH-10767	Campylobacter jejuni
GCA_033096925.1		1	SAMD00620700	BCH-10666	Campylobacter jejuni
GCA_033096905.1		1	SAMD00620694	BCH-10611	Campylobacter jejuni
GCA_033096885.1		1	SAMD00620693	BCH-10605	Campylobacter jejuni
GCA_033096865.1		1	SAMD00620690	BCH-10579	Campylobacter jejuni
GCA_033096845.1		1	SAMD00620689	BCH-10570	Campylobacter jejuni
GCA_033096825.1		1	SAMD00620688	BCH-10569	Campylobacter jejuni
GCA_033096805.1		1	SAMD00620687	BCH-10544	Campylobacter jejuni
GCA_033096785.1		1	SAMD00620684	BCH-10518	Campylobacter jejuni
GCA_033097125.1		1	SAMD00620735	BCH-11447	Campylobacter jejuni
GCA_033097105.1		1	SAMD00620728	BCH-11353	Campylobacter jejuni
GCA_033097085.1		1	SAMD00620727	BCH-11348	Campylobacter jejuni
GCA_033097065.1		1	SAMD00620726	BCH-11320	Campylobacter jejuni
GCA_033097045.1		1	SAMD00620724	BCH-11253	Campylobacter jejuni
GCA_033097025.1		1	SAMD00620720	BCH-11107	Campylobacter jejuni
GCA_033097185.1		1	SAMD00620741	BCH-11527	Campylobacter jejuni
GCA_033097165.1		1	SAMD00620739	BCH-11511	Campylobacter jejuni
GCA_033097285.1		1	SAMD00620770	IDH-12583	Campylobacter jejuni
GCA_033097265.1		1	SAMD00620769	IDH-12448	Campylobacter jejuni
GCA_033097245.1		1	SAMD00620763	IDH-12128	Campylobacter jejuni
GCA_033097225.1		1	SAMD00620758	IDH-11860	Campylobacter jejuni
GCA_033240345.1	BTDR00000000		SAMD00620678	BCH-10412	Campylobacter jejuni
GCA_033240325.1	BTDQ00000000		SAMD00620670	BCH-10263	Campylobacter jejuni
GCA_033240305.1	BTDP00000000		SAMD00620669	BCH-10255	Campylobacter jejuni
GCA_033240425.1	BTDV00000000		SAMD00620772	BCH-10440	Campylobacter jejuni
GCA_033240405.1	BTDU00000000		SAMD00620682	BCH-10432	Campylobacter jejuni
GCA_033240385.1	BTDT00000000		SAMD00620681	BCH-10431	Campylobacter jejuni
GCA_033240875.1	BTEK00000000		SAMD00620714	BCH-10954	Campylobacter jejuni
GCA_033240795.1	BTEI00000000		SAMD00620711	BCH-10904	Campylobacter jejuni
GCA_033240815.1	BTEJ00000000		SAMD00620713	BCH-10948	Campylobacter jejuni
GCA_033240715.1	BTEH00000000		SAMD00620710	BCH-10892	Campylobacter jejuni
GCA_033240655.1	BTEG00000000		SAMD00620709	BCH-10885	Campylobacter jejuni
GCA_033240625.1	BTEF00000000		SAMD00620706	BCH-10834	Campylobacter jejuni
GCA_033240605.1	BTEE00000000		SAMD00620705	BCH-10800	Campylobacter jejuni
GCA_033240585.1	BTED00000000		SAMD00620704	BCH-10778	Campylobacter jejuni
GCA_033240565.1	BTEC00000000		SAMD00620703	BCH-10776	Campylobacter jejuni
GCA_033240545.1	BTEB00000000		SAMD00620701	BCH-10711	Campylobacter jejuni
GCA_033240525.1	BTEA00000000		SAMD00620699	BCH-10646	Campylobacter jejuni
GCA_033240505.1	BTDZ00000000		SAMD00620696	BCH-10628	Campylobacter jejuni
GCA_033240485.1	BTDY00000000		SAMD00620692	BCH-10589	Campylobacter jejuni
GCA_033240465.1	BTDX00000000		SAMD00620691	BCH-10583	Campylobacter jejuni
GCA_033241035.1	BTEN00000000		SAMD00620722	BCH-11199	Campylobacter jejuni
GCA_033240975.1	BTEM00000000		SAMD00620721	BCH-11111	Campylobacter jejuni
GCA_033241535.1	BTEV00000000		SAMD00620745	BCH-11595	Campylobacter jejuni
GCA_033241495.1	BTEU00000000		SAMD00620743	BCH-11533	Campylobacter jejuni
GCA_033241435.1	BTET00000000		SAMD00620734	BCH-11428	Campylobacter jejuni
GCA_033241295.1	BTER00000000		SAMD00620732	BCH-11417	Campylobacter jejuni
GCA_033241235.1	BTEQ00000000		SAMD00620729	BCH-11387	Campylobacter jejuni
GCA_033241135.1	BTEP00000000		SAMD00620725	BCH-11311	Campylobacter jejuni
GCA_033241945.1	BTFD00000000		SAMD00620753	BCH-12599	Campylobacter jejuni
GCA_033241905.1	BTFC00000000		SAMD00620752	BCH-12340	Campylobacter jejuni
GCA_033241865.1	BTFB00000000		SAMD00620751	BCH-12339	Campylobacter jejuni
GCA_033241825.1	BTFA00000000		SAMD00620750	BCH-12161	Campylobacter jejuni
GCA_033241735.1	BTEZ00000000		SAMD00620749	BCH-11728	Campylobacter jejuni
GCA_033241675.1	BTEY00000000		SAMD00620748	BCH-11687	Campylobacter jejuni
GCA_033241655.1	BTEX00000000		SAMD00620747	BCH-11616	Campylobacter jejuni
GCA_033241595.1	BTEW00000000		SAMD00620746	BCH-11614	Campylobacter jejuni
GCA_033242025.1	BTFG00000000		SAMD00620757	IDH-11854	Campylobacter jejuni
GCA_033242005.1	BTFF00000000		SAMD00620756	IDH-11849	Campylobacter jejuni
GCA_033242145.1	BTFL00000000		SAMD00620765	IDH-12235	Campylobacter jejuni
GCA_033242125.1	BTFK00000000		SAMD00620764	IDH-12131	Campylobacter jejuni
GCA_033242225.1	BTFP00000000		SAMD00620771	IDH-12585	Campylobacter jejuni
GCA_033241095.1	BTEO00000000		SAMD00620723	BCH-11200	Campylobacter jejuni
GCA_033130025.1		2	SAMD00620742	BCH-11531	Campylobacter jejuni
GCA_033130005.1		2	SAMD00620740	BCH-11515	Campylobacter jejuni
GCA_033129825.1		2	SAMD00620731	BCH-11411	Campylobacter jejuni
GCA_033129305.1		2	SAMD00620698	BCH-10642	Campylobacter jejuni
GCA_033129285.1		2	SAMD00620697	BCH-10632	Campylobacter jejuni
GCA_033129205.1		2	SAMD00620695	BCH-10617	Campylobacter jejuni
GCA_033129065.1		2	SAMD00620686	BCH-10539	Campylobacter jejuni
GCA_033128945.1		2	SAMD00620685	BCH-10525	Campylobacter jejuni
GCA_033128825.1		2	SAMD00620677	BCH-10403	Campylobacter jejuni
GCA_033128685.1		2	SAMD00620676	BCH-10335	Campylobacter jejuni
GCA_033129685.1		2	SAMD00620730	BCH-11399	Campylobacter jejuni
GCA_033129985.1		2	SAMD00620738	BCH-11505	Campylobacter jejuni
GCA_033129365.1		2	SAMD00620712	BCH-10927	Campylobacter jejuni
GCA_033129345.1		2	SAMD00620708	BCH-10881	Campylobacter jejuni
GCA_033129965.1		2	SAMD00620736	BCH-11457	Campylobacter jejuni
GCA_033128585.1		2	SAMD00620675	BCH-10331	Campylobacter jejuni
GCA_033128465.1		2	SAMD00620674	BCH-10330	Campylobacter jejuni
GCA_033128325.1		2	SAMD00620664	BCH-10155	Campylobacter jejuni
GCA_033129525.1		2	SAMD00620715	BCH-10973	Campylobacter lari
GCA_033242205.1	BTFO00000000		SAMD00620768	IDH-12421	Campylobacter lari

SRA Data Details

Parameter	Value
Data volume, Gbases	108
Data volume, Mbytes	52057

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Campylobacter

Genomic surveillance of Campylobacter isolates from humans in Kolkata, India

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