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Links from Protein

Accession: PRJDB10679 ID: 891944

Bacteria

Agarose gel microcapsule enables easy-to-prepare, picolitre-scale single-cell genomics yielding near-complete genome sequences.

Single-cell genome analysis of human-gut bacterial strains and termite-gut bacterial community by MDA-in-AGM and FACS-MDA.
AccessionPRJDB10679
Data TypeGenome sequencing and assembly
ScopeMultiisolate
Publications
  • Aoki H et al., "Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequences.", Sci Rep, 2022 Oct 18;12(1):17014
  • Published online: Aoki H et al., "Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequences", Scientific Reports, 2022;12(1)
SubmissionRegistration date: 18-Oct-2022
Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center
RelevanceEnvironmental
Locus Tag PrefixOO827
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)50459
WGS master228
SRA Experiments354
Protein Sequences312955
Publications
PubMed1
PMC1
Other datasets
BioSample355
Assembly228
Assembly details:
Assembly levelNumber of Assemblies
228
228
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
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MS502-18
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PG1894-49
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PG1894-205
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PG1894-186
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MS502-96
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PG1894-193
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PG1894-192
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MS502-62
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MS502-39
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MS495-25
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PG1894-180
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PG1894-153
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PG1894-74
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PG1894-41
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MS502-89
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MS502-56
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MS502-43
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MS495-43
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MS502-25
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MS499-60
GCA_025996955.1ContigBNTY00000000SAMD00253630
MS495-45
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PG1894-103
GCA_026001665.1ContigBOAG00000000SAMD00253794
PG1894-87
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MS495-21
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MS502-29
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PG1894-120
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PG1894-99
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PG1894-92
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PG1894-18
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PG1894-171
GCA_025997255.1ContigBNUI00000000SAMD00253640
MS502-84
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MS499-92
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MS499-83
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MS499-75
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MS499-41
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MS502-48
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MS499-74
GCA_025997295.1ContigBNUK00000000SAMD00253642
MS499-25
GCA_026001625.1ContigBOAE00000000SAMD00253792
PG1894-60
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PG1894-206
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PG1894-168
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MS499-50
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MS495-56
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MS495-31
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MS502-6
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MS499-95
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MS499-53
GCA_025998095.1ContigBNVM00000000SAMD00253670
MS499-29
GCA_026002775.1ContigBOCF00000000SAMD00256522
DH5[alpha]
GCA_025997455.1ContigBNUP00000000SAMD00253647
MS499-38
GCA_026001845.1ContigBOAM00000000SAMD00253800
PG1894-19
GCA_026001805.1ContigBOAL00000000SAMD00253799
PG1894-189
GCA_026001785.1ContigBOAK00000000SAMD00253798
PG1894-170
GCA_026001705.1ContigBOAH00000000SAMD00253795
PG1894-107
GCA_026001765.1ContigBOAJ00000000SAMD00253797
PG1894-139
GCA_026001725.1ContigBOAI00000000SAMD00253796
PG1894-108
GCA_026001965.1ContigBOAR00000000SAMD00253805
PG1894-54
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PG1894-43
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PG1894-27
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PG1894-214
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PG1894-2
GCA_025997475.1ContigBNUQ00000000SAMD00253648
MS499-59
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PG1894-98
GCA_026002655.1ContigBOBZ00000000SAMD00253839
PG1894-94
GCA_026002635.1ContigBOBY00000000SAMD00253838
PG1894-93
GCA_026002615.1ContigBOBX00000000SAMD00253837
PG1894-91
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PG1894-85
GCA_026002575.1ContigBOBV00000000SAMD00253835
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PG1894-61
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PG1894-50
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PG1894-47
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PG1894-44
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PG1894-200
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PG1894-190
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PG1894-172
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PG1894-164
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PG1894-163
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PG1894-161
GCA_026002205.1ContigBOBD00000000SAMD00253817
PG1894-151
GCA_026002185.1ContigBOBC00000000SAMD00253816
PG1894-147
GCA_026002165.1ContigBOBB00000000SAMD00253815
PG1894-142
GCA_026002145.1ContigBOBA00000000SAMD00253814
PG1894-141
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PG1894-140
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PG1894-137
GCA_026002085.1ContigBOAX00000000SAMD00253811
PG1894-130
GCA_026002065.1ContigBOAW00000000SAMD00253810
PG1894-124
GCA_026002045.1ContigBOAV00000000SAMD00253809
PG1894-110
GCA_026002025.1ContigBOAU00000000SAMD00253808
PG1894-109
GCA_026002005.1ContigBOAT00000000SAMD00253807
PG1894-106
GCA_026001985.1ContigBOAS00000000SAMD00253806
PG1894-102
GCA_025997875.1ContigBNVE00000000SAMD00253662
MS502-68
GCA_025997835.1ContigBNVD00000000SAMD00253661
MS502-67
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MS502-55
GCA_025997895.1ContigBNVF00000000SAMD00253663
MS502-93
GCA_025997535.1ContigBNUS00000000SAMD00253650
MS495-46
GCA_025997495.1ContigBNUR00000000SAMD00253649
MS495-2
GCA_025997595.1ContigBNUU00000000SAMD00253652
MS495-87
GCA_025997555.1ContigBNUT00000000SAMD00253651
MS495-79
GCA_025997735.1ContigBNUZ00000000SAMD00253657
MS499-91
GCA_025997715.1ContigBNUY00000000SAMD00253656
MS499-44
GCA_025997675.1ContigBNUX00000000SAMD00253655
MS499-42
GCA_025997655.1ContigBNUW00000000SAMD00253654
MS499-40
GCA_025997615.1ContigBNUV00000000SAMD00253653
MS499-28
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MS502-30
GCA_025997755.1ContigBNVA00000000SAMD00253658
MS502-12
GCA_025997935.1ContigBNVG00000000SAMD00253664
MS499-57
GCA_025997955.1ContigBNVH00000000SAMD00253665
MS502-76
GCA_026002755.1ContigBOCE00000000SAMD00253844
PG1894-216
GCA_026002735.1ContigBOCD00000000SAMD00253843
PG1894-204
GCA_026002715.1ContigBOCC00000000SAMD00253842
PG1894-187
GCA_026002695.1ContigBOCB00000000SAMD00253841
PG1894-167
GCA_025997135.1ContigBNUE00000000SAMD00253636
MS502-49
SRA Data Details
ParameterValue
Data volume, Gbases188
Data volume, Mbytes97572

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