Vibrio (ID 610543) - BioProject

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Accession: PRJDB8600 ID: 610543

Vibrio

Comprehensive phylogenetic analysis and genome dynamics of O-serogroup reference strains in Vibrio cholerae

Vibrio cholerae is a member of the Vibrionaceae family that is found in coastal waters and estuaries, and more than 200 serogroups have been identified. More...

Accession	PRJDB8600
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Vibrio[Taxonomy ID: 662] Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Submission	Registration date: 4-Mar-2020 Department of Microbiology, Graduate School of Medicine, Kyoto University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	20343
WGS master	180
Genomic DNA	226
SRA Experiments	217
Protein Sequences	673935
Other datasets
BioSample	206
Assembly	190

Assembly details:

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Assembly level

Number of Assemblies

10
4
176
190

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_023168045.1		2	SAMD00180548	RIMD 2214255	Vibrio cholerae
GCA_023167285.1	BOIK00000000		SAMD00180646	RIMD 2214316	Vibrio cholerae
GCA_023167205.1	BOIJ00000000		SAMD00180644	RIMD 2214314	Vibrio cholerae
GCA_023167485.1	BOIT00000000		SAMD00180655	RIMD 2214324	Vibrio cholerae
GCA_023167445.1	BOIS00000000		SAMD00180654	RIMD 2214323	Vibrio cholerae
GCA_023167425.1	BOIR00000000		SAMD00180653	RIMD 2214322	Vibrio cholerae
GCA_023167405.1	BOIQ00000000		SAMD00180652	RIMD 2214321	Vibrio cholerae
GCA_023167385.1	BOIP00000000		SAMD00180651	RIMD 2214320	Vibrio cholerae
GCA_023167365.1	BOIO00000000		SAMD00180650	RIMD 2214319	Vibrio cholerae
GCA_023167345.1	BOIN00000000		SAMD00180649	RIMD 2214318	Vibrio cholerae
GCA_023167325.1	BOIM00000000		SAMD00180648	RIMD 2214246	Vibrio cholerae
GCA_023167305.1	BOIL00000000		SAMD00180647	RIMD 2214317	Vibrio cholerae
GCA_023168285.1		2	SAMD00180666	RIMD 2214334	Vibrio cholerae
GCA_023168265.1		2	SAMD00180645	RIMD 2214315	Vibrio cholerae
GCA_023168245.1		2	SAMD00180632	RIMD 2214301	Vibrio cholerae
GCA_023168225.1		2	SAMD00180619	RIMD 2214289	Vibrio cholerae
GCA_023168205.1		2	SAMD00180617	RIMD 2214243	Vibrio cholerae
GCA_023168185.1		2	SAMD00180612	RIMD 2214283	Vibrio cholerae
GCA_023167985.1		2	SAMD00180541	RIMD 2214400	Vibrio cholerae
GCA_023168005.1	BOJG00000000		SAMD00180669	RIMD 2214337	Vibrio cholerae
GCA_023167965.1	BOJF00000000		SAMD00180668	RIMD 2214336	Vibrio cholerae
GCA_023167945.1	BOJE00000000		SAMD00180667	RIMD 2214335	Vibrio cholerae
GCA_023167925.1		2	SAMD00180482	RIMD 2214340	Vibrio cholerae
GCA_023167905.1	BOJD00000000		SAMD00180665	RIMD 2214333	Vibrio cholerae
GCA_023167825.1	BOJC00000000		SAMD00180664	RIMD 2214332	Vibrio cholerae
GCA_023167565.1	BOIW00000000		SAMD00180658	RIMD 2214327	Vibrio cholerae
GCA_023167525.1	BOIV00000000		SAMD00180657	RIMD 2214326	Vibrio cholerae
GCA_023167505.1	BOIU00000000		SAMD00180656	RIMD 2214325	Vibrio cholerae
GCA_023167625.1	BOIY00000000		SAMD00180660	RIMD 2214328	Vibrio cholerae
GCA_023167585.1	BOIX00000000		SAMD00180659	RIMD 2214247	Vibrio cholerae
GCA_023168105.1		2	SAMD00180584	RIMD 2214445	Vibrio cholerae
GCA_023167805.1	BOJB00000000		SAMD00180663	RIMD 2214331	Vibrio cholerae
GCA_023167665.1	BOJA00000000		SAMD00180662	RIMD 2214330	Vibrio cholerae
GCA_023167645.1	BOIZ00000000		SAMD00180661	RIMD 2214329	Vibrio cholerae
GCA_023163165.1	BOEI00000000		SAMD00180531	RIMD 2214391	Vibrio cholerae
GCA_023163145.1	BOEH00000000		SAMD00180530	RIMD 2214390	Vibrio cholerae
GCA_023163125.1	BOEG00000000		SAMD00180529	RIMD 2214389	Vibrio cholerae
GCA_023163105.1	BOEF00000000		SAMD00180528	RIMD 2214388	Vibrio cholerae
GCA_023163085.1	BOEE00000000		SAMD00180526	RIMD 2214387	Vibrio cholerae
GCA_023163065.1	BOED00000000		SAMD00180525	RIMD 2214386	Vibrio cholerae
GCA_023163045.1	BOEC00000000		SAMD00180524	RIMD 2214385	Vibrio cholerae
GCA_023163025.1	BOEB00000000		SAMD00180523	RIMD 2214384	Vibrio cholerae
GCA_023163005.1	BOEA00000000		SAMD00180522	RIMD 2214383	Vibrio cholerae
GCA_023162985.1	BODZ00000000		SAMD00180521	RIMD 2214382	Vibrio cholerae
GCA_023162965.1	BODY00000000		SAMD00180520	RIMD 2214380	Vibrio cholerae
GCA_023162945.1	BODX00000000		SAMD00180519	RIMD 2214379	Vibrio cholerae
GCA_023162925.1	BODW00000000		SAMD00180518	RIMD 2214378	Vibrio cholerae
GCA_023162905.1	BODV00000000		SAMD00180517	RIMD 2214252	Vibrio cholerae
GCA_023162885.1	BODU00000000		SAMD00180516	RIMD 2214377	Vibrio cholerae
GCA_023162865.1	BODT00000000		SAMD00180515	RIMD 2214375	Vibrio cholerae
GCA_023162845.1	BODS00000000		SAMD00180514	RIMD 2214374	Vibrio cholerae
GCA_023162825.1	BODR00000000		SAMD00180513	RIMD 2214372	Vibrio cholerae
GCA_023162805.1	BODQ00000000		SAMD00180512	RIMD 2214371	Vibrio cholerae
GCA_023162785.1	BODP00000000		SAMD00180511	RIMD 2214370	Vibrio cholerae
GCA_023162765.1	BODO00000000		SAMD00180510	RIMD 2214369	Vibrio cholerae
GCA_023162745.1	BODN00000000		SAMD00180509	RIMD 2214368	Vibrio cholerae
GCA_023162725.1	BODM00000000		SAMD00180508	RIMD 2214251	Vibrio cholerae
GCA_023162705.1	BODL00000000		SAMD00180507	RIMD 2214367	Vibrio cholerae
GCA_023162685.1	BODK00000000		SAMD00180506	RIMD 2214366	Vibrio cholerae
GCA_023162665.1	BODJ00000000		SAMD00180505	RIMD 2214365	Vibrio cholerae
GCA_023162645.1	BODI00000000		SAMD00180504	RIMD 2214364	Vibrio cholerae
GCA_023162625.1	BODH00000000		SAMD00180503	RIMD 2214363	Vibrio cholerae
GCA_023167105.1	BOII00000000		SAMD00180643	RIMD 2214313	Vibrio cholerae
GCA_023167025.1	BOIH00000000		SAMD00180642	RIMD 2214312	Vibrio cholerae
GCA_023166895.1	BOIG00000000		SAMD00180641	RIMD 2214310	Vibrio cholerae
GCA_023166745.1	BOIF00000000		SAMD00180640	RIMD 2214308	Vibrio cholerae
GCA_023166665.1	BOIE00000000		SAMD00180639	RIMD 2214245	Vibrio cholerae
GCA_023166605.1	BOID00000000		SAMD00180638	RIMD 2214307	Vibrio cholerae
GCA_023166485.1	BOIC00000000		SAMD00180637	RIMD 2214306	Vibrio cholerae
GCA_023166465.1	BOIB00000000		SAMD00180636	RIMD 2214305	Vibrio cholerae
GCA_023166445.1	BOIA00000000		SAMD00180635	RIMD 2214304	Vibrio cholerae
GCA_023166425.1	BOHZ00000000		SAMD00180634	RIMD 2214303	Vibrio cholerae
GCA_023166405.1	BOHY00000000		SAMD00180633	RIMD 2214302	Vibrio cholerae
GCA_023166385.1	BOHX00000000		SAMD00180631	RIMD 2214300	Vibrio cholerae
GCA_023166365.1	BOHW00000000		SAMD00180630	RIMD 2214299	Vibrio cholerae
GCA_023166345.1	BOHV00000000		SAMD00180629	RIMD 2214298	Vibrio cholerae
GCA_023166325.1	BOHU00000000		SAMD00180628	RIMD 2214244	Vibrio cholerae
GCA_023166305.1	BOHT00000000		SAMD00180627	RIMD 2214297	Vibrio cholerae
GCA_023166285.1	BOHS00000000		SAMD00180626	RIMD 2214296	Vibrio cholerae
GCA_023166265.1	BOHR00000000		SAMD00180625	RIMD 2214295	Vibrio cholerae
GCA_023166245.1	BOHQ00000000		SAMD00180624	RIMD 2214294	Vibrio cholerae
GCA_023166225.1	BOHP00000000		SAMD00180623	RIMD 2214293	Vibrio cholerae
GCA_023166205.1	BOHO00000000		SAMD00180622	RIMD 2214292	Vibrio cholerae
GCA_023166185.1	BOHN00000000		SAMD00180621	RIMD 2214291	Vibrio cholerae
GCA_023166165.1	BOHM00000000		SAMD00180620	RIMD 2214290	Vibrio cholerae
GCA_023166145.1	BOHL00000000		SAMD00180618	RIMD 2214288	Vibrio cholerae
GCA_023166125.1	BOHK00000000		SAMD00180616	RIMD 2214287	Vibrio cholerae
GCA_023166005.1	BOHJ00000000		SAMD00180615	RIMD 2214286	Vibrio cholerae
GCA_023165945.1	BOHI00000000		SAMD00180614	RIMD 2214285	Vibrio cholerae
GCA_023165845.1	BOHH00000000		SAMD00180613	RIMD 2214284	Vibrio cholerae
GCA_023165765.1	BOHG00000000		SAMD00180611	RIMD 2214282	Vibrio cholerae
GCA_023165745.1	BOHF00000000		SAMD00180610	RIMD 2214281	Vibrio cholerae
GCA_023165645.1	BOHE00000000		SAMD00180609	RIMD 2214280	Vibrio cholerae
GCA_023165585.1	BOHD00000000		SAMD00180608	RIMD 2214279	Vibrio cholerae
GCA_023165425.1	BOHC00000000		SAMD00180607	RIMD 2214278	Vibrio cholerae
GCA_023165305.1	BOHB00000000		SAMD00180606	RIMD 2214242	Vibrio cholerae
GCA_023165285.1	BOHA00000000		SAMD00180605	RIMD 2214277	Vibrio cholerae
GCA_023165265.1	BOGZ00000000		SAMD00180604	RIMD 2214276	Vibrio cholerae
GCA_023165245.1	BOGY00000000		SAMD00180603	RIMD 2214275	Vibrio cholerae
GCA_023165225.1	BOGX00000000		SAMD00180602	RIMD 2214274	Vibrio cholerae
GCA_023165205.1	BOGW00000000		SAMD00180601	RIMD 2214273	Vibrio cholerae
GCA_023165185.1	BOGV00000000		SAMD00180600	RIMD 2214272	Vibrio cholerae
GCA_023165165.1	BOGU00000000		SAMD00180599	RIMD 2214271	Vibrio cholerae
GCA_023165145.1	BOGT00000000		SAMD00180598	RIMD 2214269	Vibrio cholerae
GCA_023165125.1	BOGS00000000		SAMD00180597	RIMD 2214241	Vibrio cholerae
GCA_023165105.1	BOGR00000000		SAMD00180596	RIMD 2214267	Vibrio cholerae
GCA_023165085.1	BOGQ00000000		SAMD00180595	RIMD 2214266	Vibrio cholerae
GCA_023165065.1	BOGP00000000		SAMD00180594	RIMD 2214265	Vibrio cholerae
GCA_023165045.1	BOGO00000000		SAMD00180593	RIMD 2214264	Vibrio cholerae
GCA_023165025.1	BOGN00000000		SAMD00180592	RIMD 2214263	Vibrio cholerae
GCA_023165005.1	BOGM00000000		SAMD00180591	RIMD 2214262	Vibrio cholerae
GCA_023164985.1	BOGL00000000		SAMD00180590	RIMD 2214261	Vibrio cholerae
GCA_023164965.1	BOGK00000000		SAMD00180589	RIMD 2214260	Vibrio cholerae
GCA_023164945.1	BOGJ00000000		SAMD00180588	RIMD 2214259	Vibrio cholerae
GCA_023164925.1	BOGI00000000		SAMD00180587	RIMD 2214448	Vibrio cholerae
GCA_023164905.1	BOGH00000000		SAMD00180586	RIMD 2214447	Vibrio cholerae
GCA_023164885.1	BOGG00000000		SAMD00180585	RIMD 2214446	Vibrio cholerae
GCA_023164865.1	BOGF00000000		SAMD00180583	RIMD 2214444	Vibrio cholerae
GCA_023164845.1	BOGE00000000		SAMD00180582	RIMD 2214443	Vibrio cholerae
GCA_023164825.1	BOGD00000000		SAMD00180581	RIMD 2214442	Vibrio cholerae
GCA_023164805.1	BOGC00000000		SAMD00180580	RIMD 2214438	Vibrio cholerae
GCA_023164785.1	BOGB00000000		SAMD00180579	RIMD 2214240	Vibrio cholerae
GCA_023164765.1	BOGA00000000		SAMD00180578	RIMD 2214437	Vibrio cholerae
GCA_023164705.1	BOFZ00000000		SAMD00180577	RIMD 2214436	Vibrio cholerae
GCA_023164585.1	BOFY00000000		SAMD00180576	RIMD 2214435	Vibrio cholerae
GCA_023164505.1	BOFX00000000		SAMD00180575	RIMD 2214434	Vibrio cholerae
GCA_023164445.1	BOFW00000000		SAMD00180573	RIMD 2214431	Vibrio cholerae
GCA_023164425.1	BOFV00000000		SAMD00180572	RIMD 2214430	Vibrio cholerae
GCA_023164405.1	BOFU00000000		SAMD00180571	RIMD 2214429	Vibrio cholerae
GCA_023164385.1	BOFT00000000		SAMD00180570	RIMD 2214428	Vibrio cholerae
GCA_023164365.1	BOFS00000000		SAMD00180569	RIMD 2214257	Vibrio cholerae
GCA_023164345.1	BOFR00000000		SAMD00180568	RIMD 2214426	Vibrio cholerae
GCA_023164325.1	BOFQ00000000		SAMD00180567	RIMD 2214425	Vibrio cholerae
GCA_023164305.1	BOFP00000000		SAMD00180566	RIMD 2214424	Vibrio cholerae
GCA_023164285.1	BOFO00000000		SAMD00180565	RIMD 2214423	Vibrio cholerae
GCA_023164265.1	BOFN00000000		SAMD00180564	RIMD 2214422	Vibrio cholerae
GCA_023164245.1	BOFM00000000		SAMD00180563	RIMD 2214421	Vibrio cholerae
GCA_023164225.1	BOFL00000000		SAMD00180562	RIMD 2214420	Vibrio cholerae
GCA_023164205.1	BOFK00000000		SAMD00180561	RIMD 2214419	Vibrio cholerae
GCA_023164185.1	BOFJ00000000		SAMD00180560	RIMD 2214418	Vibrio cholerae
GCA_023164165.1	BOFI00000000		SAMD00180559	RIMD 2214256	Vibrio cholerae
GCA_023164145.1	BOFH00000000		SAMD00180558	RIMD 2214417	Vibrio cholerae
GCA_023164125.1	BOFG00000000		SAMD00180557	RIMD 2214416	Vibrio cholerae
GCA_023164105.1	BOFF00000000		SAMD00180556	RIMD 2214415	Vibrio cholerae
GCA_023164085.1	BOFE00000000		SAMD00180555	RIMD 2214414	Vibrio cholerae
GCA_023164065.1	BOFD00000000		SAMD00180554	RIMD 2214413	Vibrio cholerae
GCA_023164045.1	BOFC00000000		SAMD00180553	RIMD 2214412	Vibrio cholerae
GCA_023164025.1	BOFB00000000		SAMD00180552	RIMD 2214411	Vibrio cholerae
GCA_023164005.1	BOFA00000000		SAMD00180551	RIMD 2214410	Vibrio cholerae
GCA_023163985.1	BOEZ00000000		SAMD00180550	RIMD 2214409	Vibrio cholerae
GCA_023163965.1	BOEY00000000		SAMD00180549	RIMD 2214408	Vibrio cholerae
GCA_023163945.1	BOEX00000000		SAMD00180547	RIMD 2214407	Vibrio cholerae
GCA_023163925.1	BOEW00000000		SAMD00180546	RIMD 2214406	Vibrio cholerae
GCA_023163905.1	BOEV00000000		SAMD00180545	RIMD 2214404	Vibrio cholerae
GCA_023163885.1	BOEU00000000		SAMD00180544	RIMD 2214403	Vibrio cholerae
GCA_023163865.1	BOET00000000		SAMD00180543	RIMD 2214402	Vibrio cholerae
GCA_023163845.1	BOES00000000		SAMD00180542	RIMD 2214401	Vibrio cholerae
GCA_023163805.1	BOEQ00000000		SAMD00180539	RIMD 2214398	Vibrio cholerae
GCA_023163825.1	BOER00000000		SAMD00180540	RIMD 2214399	Vibrio cholerae
GCA_023163785.1	BOEP00000000		SAMD00180538	RIMD 2214254	Vibrio cholerae
GCA_023163765.1	BOEO00000000		SAMD00180537	RIMD 2214397	Vibrio cholerae
GCA_023163745.1	BOCJ00000000		SAMD00180478	RIMD2203088	Vibrio cholerae
GCA_023163725.1	BOCK00000000		SAMD00180479	RIMD2203098	Vibrio cholerae
GCA_023163705.1	BOCL00000000		SAMD00180480	RIMD 2214248	Vibrio cholerae
GCA_023163685.1	BOCM00000000		SAMD00180481	RIMD 2214338	Vibrio cholerae
GCA_023163665.1	BOCN00000000		SAMD00180483	RIMD 2214341	Vibrio cholerae
GCA_023163645.1	BOCO00000000		SAMD00180484	RIMD 2214342	Vibrio cholerae
GCA_023163625.1	BOCP00000000		SAMD00180485	RIMD 2214343	Vibrio cholerae
GCA_023163605.1	BOCQ00000000		SAMD00180486	RIMD 2214344	Vibrio cholerae
GCA_023163585.1	BOCR00000000		SAMD00180487	RIMD 2214345	Vibrio cholerae
GCA_023163565.1	BOCS00000000		SAMD00180488	RIMD 2214346	Vibrio cholerae
GCA_023163545.1	BOCT00000000		SAMD00180489	RIMD 2214347	Vibrio cholerae
GCA_023163525.1	BOCU00000000		SAMD00180490	RIMD 2214249	Vibrio cholerae
GCA_023163505.1	BOCV00000000		SAMD00180491	RIMD 2214348	Vibrio cholerae
GCA_023163485.1	BOCW00000000		SAMD00180492	RIMD 2214349	Vibrio cholerae
GCA_023163465.1	BOCX00000000		SAMD00180493	RIMD 2214350	Vibrio cholerae
GCA_023163445.1	BOCY00000000		SAMD00180494	RIMD 2214351	Vibrio cholerae
GCA_023163425.1	BOCZ00000000		SAMD00180495	RIMD 2214356	Vibrio cholerae
GCA_023163405.1	BODA00000000		SAMD00180496	RIMD 2214357	Vibrio cholerae
GCA_023163385.1	BODB00000000		SAMD00180497	RIMD 2214250	Vibrio cholerae
GCA_023163365.1	BODC00000000		SAMD00180498	RIMD 2214358	Vibrio cholerae
GCA_023163345.1	BODD00000000		SAMD00180499	RIMD 2214359	Vibrio cholerae
GCA_023163325.1	BODE00000000		SAMD00180500	RIMD 2214360	Vibrio cholerae
GCA_023163305.1	BODF00000000		SAMD00180501	RIMD 2214361	Vibrio cholerae
GCA_023163285.1	BODG00000000		SAMD00180502	RIMD 2214362	Vibrio cholerae
GCA_023163265.1	BOEN00000000		SAMD00180536	RIMD 2214396	Vibrio cholerae
GCA_023163245.1	BOEM00000000		SAMD00180535	RIMD 2214395	Vibrio cholerae
GCA_023163225.1	BOEL00000000		SAMD00180534	RIMD 2214394	Vibrio cholerae
GCA_023163205.1	BOEK00000000		SAMD00180533	RIMD 2214393	Vibrio cholerae
GCA_023163185.1	BOEJ00000000		SAMD00180532	RIMD 2214392	Vibrio metoecus

SRA Data Details

Parameter	Value
Data volume, Gbases	175
Data volume, Tbytes	0.10

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Vibrio

Comprehensive phylogenetic analysis and genome dynamics of O-serogroup reference strains in Vibrio cholerae

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