Treponema (ID 284866) - BioProject

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Accession: PRJNA284866 ID: 284866

Treponema

Treponema Genome sequencing and assembly

Complete genome sequencing of human oral Treponema species.

Accession	PRJNA284866
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Treponema[Taxonomy ID: 157] Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema
Publications	Zeng H et al., "Complete Genome Sequences of Three Human Oral Treponema parvum Isolates.", Microbiol Resour Announc, 2021 Jul 8;10(27):e0039421
Submission	Registration date: 9-Apr-2021 The University of Hong Kong
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	37
SRA Experiments	21
Protein Sequences	90291
Publications
PubMed	1
PMC	1
Other datasets
BioSample	66
Assembly	37

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

37
37

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_024400725.1	1	SAMN11253852	ATCC 700771	Treponema denticola
GCA_024400535.1	1	SAMN11253853	ATCC 700768	Treponema denticola
GCA_024181565.1	1	SAMN11253861	OMZ 905	Treponema denticola
GCA_024181545.1	1	SAMN11253858	OMZ 850	Treponema denticola
GCA_024181505.1	1	SAMN11253860	OMZ 898	Treponema denticola
GCA_024181485.1	1	SAMN11253859	OMZ 852	Treponema denticola
GCA_024181465.1	1	SAMN11253862	OMZ 910	Treponema denticola
GCA_024181445.1	1	SAMN11253854	CD-1	Treponema denticola
GCA_024181425.1	1	SAMN11253866	OT2B	Treponema denticola
GCA_024181405.1	1	SAMN14586814	OMZ 853	Treponema denticola
GCA_024181645.1	1	SAMN14933810	OMZ 854	Treponema denticola
GCA_024181625.1	1	SAMN11253865	OKA3	Treponema denticola
GCA_024181605.1	1	SAMN11253855	OMZ 823	Treponema denticola
GCA_017893985.1	1	SAMN15391246	OMZ 843	Treponema parvum
GCA_017893965.1	1	SAMN15062831	ATCC 700770	Treponema parvum
GCA_017893945.1	1	SAMN15042356	ATCC 700773	Treponema parvum
GCA_024400855.1	1	SAMN11253851	OMZ 847	Treponema putidum
GCA_024401155.1	1	SAMN11253849	OMZ 835	Treponema putidum
GCA_024401005.1	1	SAMN11253850	OMZ 846	Treponema putidum
GCA_024181585.1	1	SAMN15042362	ATCC 35534	Treponema socranskii subsp. buccale
GCA_024181665.1	1	SAMN15402430	B152	Treponema sp. B152
GCA_024181325.1	1	SAMN03733597	OMZ 305	Treponema sp. OMZ 305
GCA_024181225.1	1	SAMN11253880	OMZ 787	Treponema sp. OMZ 787
GCA_024181245.1	1	SAMN11253875	OMZ 788	Treponema sp. OMZ 788
GCA_024181265.1	1	SAMN11253881	OMZ 789	Treponema sp. OMZ 789
GCA_024181285.1	1	SAMN11253876	OMZ 790	Treponema sp. OMZ 790
GCA_024181305.1	1	SAMN11253877	OMZ 791	Treponema sp. OMZ 791
GCA_024181345.1	1	SAMN11253878	OMZ 792	Treponema sp. OMZ 792
GCA_024181385.1	1	SAMN11253882	OMZ 798	Treponema sp. OMZ 798
GCA_024181365.1	1	SAMN11253879	OMZ 799	Treponema sp. OMZ 799
GCA_024181165.1	1	SAMN03733599	BF2M	Treponema sp. OMZ 803
GCA_024181145.1	1	SAMN11253840	OMZ 855	Treponema sp. OMZ 855
GCA_024181085.1	1	SAMN11253841	OMZ 857	Treponema sp. OMZ 857
GCA_024181185.1	1	SAMN11253844	OMZ 906	Treponema sp. OMZ 906
GCA_024181205.1	1	SAMN11253845	OMZ 802	Treponema vincentii
GCA_024181125.1	1	SAMN11253848	OMZ 862	Treponema vincentii
GCA_024181105.1	1	SAMN11253847	OMZ 861	Treponema vincentii

SRA Data Details

Parameter	Value
Data volume, Gbases	183
Data volume, Mbytes	95941

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Treponema

Treponema Genome sequencing and assembly

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