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Accession: PRJNA40657 ID: 40657

Panicum virgatum strain:AP13 (switchgrass)

Panicum virgatum genome sequencing project

See Genome Information for Panicum virgatum
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7321 additional projects are related by organism.
DOE Joint Genome Institute is in the process of sequencing the genome of switchgrass using whole genome shotgun methodology.
AccessionPRJNA40657
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismPanicum virgatum[Taxonomy ID: 38727]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes; Panicum virgatum
Publications
  • Lovell JT et al., "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.", Nature, 2021 Feb;590(7846):438-444
  • Young HA et al., "Chloroplast genome variation in upland and lowland switchgrass.", PLoS One, 2011;6(8):e23980
SubmissionRegistration date: 5-Oct-2020
- DOE Joint Genome Institute
- JGI-PGF
Locus Tag PrefixPVAP13
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1108
WGS master1
Capillary Traces (Trace Archive)1
Protein Sequences129942
Publications
PubMed2
PMC2
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_016808335.1ChromosomeJABWAI000000000
18
SAMN00760928
Panicum virgatum
SRA Data Details
ParameterValue
Data volume, Gbases1,183
Data volume, Tbytes2.17
Related RefSeq Project
PRJNA704030 : Panicum virgatum strain:AP13 RefSeq Genome

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