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Genome Information for Plasmodium vinckei
Plasmodium vinckei is one of four rodent malaria parasite species adapted to laboratory mice and is the most geographically widespread species with isolates collected from wild thicket rats in five countries in sub-Saharan Central Africa between the late 1940s and mid 1960s.
More...Plasmodium vinckei is one of four rodent malaria parasite species adapted to laboratory mice and is the most geographically widespread species with isolates collected from wild thicket rats in five countries in sub-Saharan Central Africa between the late 1940s and mid 1960s. Several P. vinckei isolates are available as rodent malaria models but their phenotypes and genotypes are relatively less characterized compared to other RMPs thus hampering the use of this resource. To remedy this, we have generated a comprehensive resource for P. vinckei comprising of five high-quality reference genomes, genotypes and growth phenotypes for ten P. vinckei isolates, and gene expression profiles across the parasite’s intra-erythrocytic developmental stages. We have also sequenced additional P. chabaudi and P. yoeli isolates. The following are the isolates sequenced in this study-
Plasmodium vinckei vinckei CY
Plasmodium vinckei brucechwatti DA
Plasmodium vinckei brucechwatti DB
Plasmodium vinckei lentum DE
Plasmodium vinckei lentum DS
Plasmodium vinckei petteri BS
Plasmodium vinckei petteri CR
Plasmodium vinckei subsp. EH (Cameroon)
Plasmodium vinckei subsp. EL (Cameroon)
Plasmodium vinckei subsp. EE (Cameroon)
Plasmodium chabaudi subsp. EF (Cameroon)
Plasmodium yoeli yoeli 33X
Plasmodium yoeli yoeli AR
Plasmodium yoeli yoeli CN
Plasmodium yoeli nigeriensis D
Plasmodium yoeli killicki DG
Plasmodium yoeli subsp. EL (Cameroon)
Less...Accession | PRJNA667746 |
Data Type | RefSeq Other |
Scope | Monoisolate |
Organism | Plasmodium vinckei vinckei[Taxonomy ID: 54757] Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia); Plasmodium vinckei; Plasmodium vinckei vinckei |
Submission | Registration date: 6-Oct-2020 King Abdullah University of Science and Technology |
Relevance | Medical, Model Organism |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 5046 |
Genomic DNA | 16 |
Transcript | 5030 |
Protein Sequences | 5050 |
Other datasets |
BioSample | 1 |
Assembly | 1 |
Related Project Category: RefseqGenbank
PRJEB19355 : A genomic resource for the Plasmodium vinckei clade of rodent malaria parasites