Oncorhynchus mykiss isolate:Arlee (ID 639144) - BioProject

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Accession: PRJNA639144 ID: 639144

Oncorhynchus mykiss isolate:Arlee (rainbow trout)

Oncorhynchus mykiss isolate:Arlee RefSeq Genome sequencing

See Genome Information for Oncorhynchus mykiss

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289 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA623027). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA639144
Data Type	RefSeq Genome sequencing
Scope	Monoisolate
Organism	Oncorhynchus mykiss[Taxonomy ID: 8022] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus; Oncorhynchus mykiss
Publications (total 4) Less...	Gao G et al., "A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout.", G3 (Bethesda), 2021 Apr 15;11(4) More... Gao G et al., "A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout.", G3 (Bethesda), 2021 Apr 15;11(4) Pasquier J et al., "Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.", BMC Genomics, 2016 May 18;17:368 Salem M et al., "Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches.", BMC Genomics, 2010 Oct 13;11:564 Zardoya R et al., "The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss.", J Mol Evol, 1995 Dec;41(6):942-51 Less...
Submission	Registration date: 3-Jun-2020 USDA/ARS
Related Resources	USDA-ARS National Center for Cool and Cold Water Aquaculture
Relevance	Agricultural
Locus Tag Prefix	HUT35

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	119023
Transcript	118053
Protein Sequences	97730
Publications
PubMed	4
PMC	3
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_013265735.2	Chromosome	JAAXML000000000	33	SAMN14537335	Oncorhynchus mykiss

Related GenBank Project

PRJNA623027 : Oncorhynchus mykiss isolate:Arlee Genome sequencing and assembly

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Oncorhynchus mykiss isolate:Arlee (rainbow trout)

Oncorhynchus mykiss isolate:Arlee RefSeq Genome sequencing

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