Oryzias melastigma strain:HK-1 (ID 436980) - BioProject

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Accession: PRJNA436980 ID: 436980

Oryzias melastigma strain:HK-1 (Indian medaka)

Oryzias melastigma strain:HK-1 RefSeq Genome sequencing and assembly

See Genome Information for Oryzias melastigma

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42 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA401159). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA436980
Data Type	RefSeq Genome sequencing and assembly
Scope	Monoisolate
Organism	Oryzias melastigma[Taxonomy ID: 30732] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias; Oryzias melastigma
Publications (total 5) Less...	Lee BY et al., "Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma.", G3 (Bethesda), 2019 Nov 5;9(11):3537-3545 More... Lee BY et al., "Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma.", G3 (Bethesda), 2019 Nov 5;9(11):3537-3545 Kim HS et al., "The genome of the marine medaka Oryzias melastigma.", Mol Ecol Resour, 2018 May;18(3):656-665 Lai KP et al., "Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes.", BMC Genomics, 2015 Feb 27;16(1):135 Bo J et al., "Identification of differentially expressed genes and quantitative expression of complement genes in the liver of marine medaka Oryzias melastigma challenged with Vibrio parahaemolyticus.", Comp Biochem Physiol Part D Genomics Proteomics, 2012 Jun;7(2):191-200 Hwang DS et al., "Complete mitochondrial genome of the marine medaka Oryzias melastigma (Beloniformes, Adrianichthyidae).", Mitochondrial DNA, 2012 Aug;23(4):308-9 Less...
Submission	Registration date: 7-Feb-2018 Sungkyunkwan University
Relevance	Model Organism
Locus Tag Prefix	C6W53

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	57794
Transcript	49278
Protein Sequences	43099
Publications
PubMed	5
PMC	2
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_002922805.2	Chromosome	NVQA00000000	25	SAMN07596545	Oryzias melastigma

Related GenBank Project

PRJNA401159 : Oryzias melastigma strain:HK-1 Genome sequencing and assembly

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Oryzias melastigma strain:HK-1 (Indian medaka)

Oryzias melastigma strain:HK-1 RefSeq Genome sequencing and assembly

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