Bacteria (ID 554385) - BioProject

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Accession: PRJNA554385 ID: 554385

Bacteria

Whole genome sequencing of multiple bacteria isolated from eastern Antarctic desert soils using Pacbio technology.

This Bioproject comprised Pacbio RS II sequencing of genomic DNA from bacterial isolates cultured from polar desert soils of the Windmill Islands and Vestfold Hills regions of eastern Antarctica, with the primary aim of identifying secondary metabolite biosynthetic gene clusters.

Accession	PRJNA554385
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Benaud N et al., "Antarctic desert soil bacteria exhibit high novel natural product potential, evaluated through long-read genome sequencing and comparative genomics.", Environ Microbiol, 2021 Jul;23(7):3646-3664 Published online: Benaud N et al., "Antarctic desert soil bacteria exhibit high novel natural product potential, evaluated through long-read genome sequencing and comparative genomics", Environmental Microbiology, 2020;
Submission	Registration date: 17-Aug-2020 University of New South Wales
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	36
WGS master	4
Genomic DNA	32
SRA Experiments	9
Protein Sequences	62660
Publications
PubMed	1
Other datasets
BioSample	24
Assembly	17

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

13
4
17

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_015390205.1	VUOI00000000		SAMN12282945	INR13	Azospirillum sp. INR13
GCA_014217665.1		2	SAMN12282941	NBH87	Frigoribacterium sp. NBH87
GCA_014218215.1		1	SAMN12282942	NBWT11	Geodermatophilaceae bacterium NBWT11
GCA_014217685.1		2	SAMN12282936	INWT7	Glaciihabitans sp. INWT7
GCA_014217645.1		6	SAMN12282940	NBH84	Hymenobacter sp. NBH84
GCA_014217565.1		1	SAMN12282933	SPB151	Kribbella qitaiheensis
GCA_014217625.1		3	SAMN12282939	INR9	Leifsonia shinshuensis
GCA_015500075.1		5	SAMN13014950	INR15	Mesorhizobium sp. INR15
GCA_015500055.1		4	SAMN13014951	NBSH29	Mesorhizobium sp. NBSH29
GCA_015390225.1	VUOG00000000		SAMN12282938	NBM11	Novosphingobium sp. NBM11
GCA_015390265.1	VUOJ00000000		SAMN12282944	NBH48	Paracoccus sp. NBH48
GCA_014217545.1		1	SAMN12282931	NBSH8	Pseudarthrobacter sp. NBSH8
GCA_015390235.1	VUOH00000000		SAMN12282943	INWT6	Quadrisphaera sp. INWT6
GCA_014217605.1		2	SAMN12282937	NBWT7	Sphingomonas sp. NBWT7
GCA_014216315.1		2	SAMN12282932	NBSH44	Streptomyces finlayi
GCA_014216335.1		2	SAMN12282934	NBH77	Streptomyces rutgersensis
GCA_014217585.1		1	SAMN12282935	INR7	Streptomyces sp. INR7

SRA Data Details

Parameter	Value
Data volume, Gbases	7
Data volume, Mbytes	25563

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Bacteria

Whole genome sequencing of multiple bacteria isolated from eastern Antarctic desert soils using Pacbio technology.

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