Clarias magur isolate:CIFAMagur01 (ID 448280) - BioProject

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Accession: PRJNA448280 ID: 448280

Clarias magur isolate:CIFAMagur01

Clarias magur isolate:CIFAMagur01 Genome sequencing and assembly

See Genome Information for Clarias magur

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5 additional projects are related by organism.

Clarias magur is a freshwater air breathing catfish previously known as Clarias batrachus. More...

Accession	PRJNA448280
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Clarias magur[Taxonomy ID: 1594786] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Clariidae; Clarias; Clarias magur
Publications (total 6) Less...	Pandey M et al., "WGSSAT: A High-Throughput Computational Pipeline for Mining and Annotation of SSR Markers From Whole Genomes.", J Hered, 2018 Mar 16;109(3):339-343 More... Pandey M et al., "WGSSAT: A High-Throughput Computational Pipeline for Mining and Annotation of SSR Markers From Whole Genomes.", J Hered, 2018 Mar 16;109(3):339-343 Agarwal S et al., "In Silico Mining of Conserved miRNAs of Indian Catfish Clarias batrachus (Linnaeus, 1758) from the Contigs, ESTs, and BAC End Sequences.", Appl Biochem Biotechnol, 2017 Jul;182(3):956-966 Srivastava S et al., "Development and characterization of genic SSR markers from low depth genome sequence of Clarias batrachus (magur).", J Genet, 2016 Sep;95(3):603-9 Agarwal S et al., "In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data.", Genom Data, 2016 Mar;7:46-53 Kushwaha B et al., "Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes.", Meta Gene, 2015 Sep;5:105-14 Published online: "Identification and characterization of SSRs in Clarias batrachus and their application in population study", Fisheries Science, 2017;83(2):265-272 Less...
Grants	"Whole Genome Sequencing and Development of Allied Genomic Resources in two Commercially Important Fish Labeo rohita and Clarias batrachus" (Grant ID BT/PR3688/AAQ/03/571/2011, Department of Biotechnology, Ministry of Science and Technology, Government of India, New Delhi, India)
Submission	Registration date: 24-Jul-2020 Rohu and Magur Genome Sequencing Consortium - ICAR-National Bureau of Fish Genetic Resources
Relevance	Agricultural
Locus Tag Prefix	DAT39

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1796
WGS master	1
Protein Sequences	23712
Publications
PubMed	5
PMC	2
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	BioSample	Taxonomy
GCA_013621035.1	Scaffold	QNUK00000000	SAMN08826798	Clarias magur

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Clarias magur isolate:CIFAMagur01

Clarias magur isolate:CIFAMagur01 Genome sequencing and assembly

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