[Clostridium] innocuum (ID 606345) - BioProject

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Accession: PRJNA606345 ID: 606345

[Clostridium] innocuum

Clostridium innocuum as an emerging multidrug-resistant antibiotic-associated diarrheal pathogen

See Genome Information for [Clostridium] innocuum

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11 additional projects are related by organism.

The goal of this study is to determine the clinical and molecular epidemiology of Clostridium innocuum infection in children and adults.

Accession	PRJNA606345
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	[Clostridium] innocuum[Taxonomy ID: 1522] Bacteria; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; [Clostridium] innocuum
Publications	Cherny KE et al., "Association Between Clostridium innocuum and Antibiotic-Associated Diarrhea in Adults and Children: A Cross-sectional Study and Comparative Genomics Analysis.", Clin Infect Dis, 2023 Feb 8;76(3):e1244-e1251
Grants	"Clostridium innocuum as an emerging multidrug-resistant antibiotic-associated diarrheal pathogen" (Grant ID R21 AI144549, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 10-Apr-2020 Ann & Robert H. Lurie Children's Hospital of Chicago
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	132
WGS master	130
Genomic DNA	2
SRA Experiments	4
Protein Sequences	8300
Publications
PubMed	1
PMC	1
Other datasets
BioSample	132
Assembly	132

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

2
130
132

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_022693625.1	JAJTIT000000000		SAMN24171832	LK3P-180	[Clostridium] innocuum
GCA_022693605.1	JAJTIQ000000000		SAMN24171835	LK5-024	[Clostridium] innocuum
GCA_022693565.1	JAJTIS000000000		SAMN24171833	LK3P-181	[Clostridium] innocuum
GCA_022693575.1	JAJTIR000000000		SAMN24171834	LK5-005	[Clostridium] innocuum
GCA_022693545.1	JAJTIP000000000		SAMN24171836	LK5-043	[Clostridium] innocuum
GCA_022693525.1	JAJTIO000000000		SAMN24171837	MRL5543	[Clostridium] innocuum
GCA_022693465.1	JAJTIM000000000		SAMN24171839	MRL6602	[Clostridium] innocuum
GCA_022693485.1	JAJTIN000000000		SAMN24171838	MRL6598	[Clostridium] innocuum
GCA_022693475.1	JAJTIJ000000000		SAMN24171842	MRL7493	[Clostridium] innocuum
GCA_022693435.1	JAJTIL000000000		SAMN24171840	MRL6604	[Clostridium] innocuum
GCA_022693425.1	JAJTIK000000000		SAMN24171841	MRL7460	[Clostridium] innocuum
GCA_024590115.1	JAKTMP000000000		SAMN26133730	NU1-P-066vs	[Clostridium] innocuum
GCA_024590085.1	JAKTMR000000000		SAMN26133732	NU1-P-072v	[Clostridium] innocuum
GCA_024590065.1	JAKTMQ000000000		SAMN26133731	NU1-P-069v	[Clostridium] innocuum
GCA_024590055.1	JAKTMX000000000		SAMN26133739	NU1-P-086v	[Clostridium] innocuum
GCA_024590035.1	JAKTMU000000000		SAMN26133736	NU1-P-078v	[Clostridium] innocuum
GCA_024590015.1	JAKTMS000000000		SAMN26133733	NU1-P-074v	[Clostridium] innocuum
GCA_024589995.1	JAKTMV000000000		SAMN26133737	NU1-P-083v	[Clostridium] innocuum
GCA_024589975.1	JAKTMT000000000		SAMN26133735	NU1-P-076v	[Clostridium] innocuum
GCA_024589955.1	JAKTMW000000000		SAMN26133738	NU1-P-084v	[Clostridium] innocuum
GCA_024589935.1	JAKTMY000000000		SAMN26133741	NU1-P-089s	[Clostridium] innocuum
GCA_024589905.1	JAKTNA000000000		SAMN26133743	NU1-P-091v	[Clostridium] innocuum
GCA_024589895.1	JAKTMZ000000000		SAMN26133742	NU1-P-090v	[Clostridium] innocuum
GCA_024589875.1	JAKTNB000000000		SAMN26133748	NU1-P-103I	[Clostridium] innocuum
GCA_024592555.1	JAKTIN000000000		SAMN26133632	ES-LK3N-079	[Clostridium] innocuum
GCA_024592535.1	JAKTIO000000000		SAMN26133634	ES-LK3N-089v	[Clostridium] innocuum
GCA_024592505.1	JAKTIP000000000		SAMN26133635	ES-LK3N-099V	[Clostridium] innocuum
GCA_024592495.1	JAKTIQ000000000		SAMN26133637	ES-LK3N-118	[Clostridium] innocuum
GCA_024592475.1	JAKTIR000000000		SAMN26133641	ES-LK3N-157	[Clostridium] innocuum
GCA_024592455.1	JAKTIS000000000		SAMN26133643	ES-LK3N-18vs	[Clostridium] innocuum
GCA_024592425.1	JAKTIT000000000		SAMN26133644	ES-LK3P-313v	[Clostridium] innocuum
GCA_024592415.1	JAKTIY000000000		SAMN26133655	ES-LK3P-413v	[Clostridium] innocuum
GCA_024592355.1	JAKTIU000000000		SAMN26133648	ES-LK3P-333v	[Clostridium] innocuum
GCA_024592375.1	JAKTIW000000000		SAMN26133650	ES-LK3P-337v	[Clostridium] innocuum
GCA_024592365.1	JAKTIV000000000		SAMN26133649	ES-LK3P-335v	[Clostridium] innocuum
GCA_024592335.1	JAKTIX000000000		SAMN26133654	ES-LK3P-402v	[Clostridium] innocuum
GCA_024592305.1	JAKTIZ000000000		SAMN26133656	ES-LK3P-415v	[Clostridium] innocuum
GCA_024592285.1	JAKTJC000000000		SAMN26133661	ES-LK3P-474v	[Clostridium] innocuum
GCA_024592275.1	JAKTJA000000000		SAMN26133657	ES-LK3P-452v	[Clostridium] innocuum
GCA_024592255.1	JAKTJB000000000		SAMN26133658	ES-LK3P-462v	[Clostridium] innocuum
GCA_024592235.1	JAKTJD000000000		SAMN26133662	ES-LK3P-475v	[Clostridium] innocuum
GCA_024592215.1	JAKTJI000000000		SAMN26133667	ES-LK4-009v	[Clostridium] innocuum
GCA_024592175.1	JAKTJF000000000		SAMN26133664	ES-LK3P-477v	[Clostridium] innocuum
GCA_024592165.1	JAKTJG000000000		SAMN26133665	ES-LK4-006	[Clostridium] innocuum
GCA_024592155.1	JAKTJE000000000		SAMN26133663	ES-LK3P-476v	[Clostridium] innocuum
GCA_024592135.1	JAKTJH000000000		SAMN26133666	ES-LK4-008	[Clostridium] innocuum
GCA_024592085.1	JAKTJJ000000000		SAMN26133668	ES-LK4-013v	[Clostridium] innocuum
GCA_024592115.1	JAKTJQ000000000		SAMN26133678	ES-LK4-057v	[Clostridium] innocuum
GCA_024592065.1	JAKTJK000000000		SAMN26133669	ES-LK4-017	[Clostridium] innocuum
GCA_024592055.1	JAKTJL000000000		SAMN26133670	ES-LK4-023v	[Clostridium] innocuum
GCA_024592035.1	JAKTJM000000000		SAMN26133671	ES-LK4-029v	[Clostridium] innocuum
GCA_024592015.1	JAKTJN000000000		SAMN26133675	ES-LK4-047v	[Clostridium] innocuum
GCA_024591975.1	JAKTJO000000000		SAMN26133676	ES-LK4-049s	[Clostridium] innocuum
GCA_024591985.1	JAKTJR000000000		SAMN26133680	ES-LK4-060v	[Clostridium] innocuum
GCA_024591955.1	JAKTJP000000000		SAMN26133677	ES-LK4-051s	[Clostridium] innocuum
GCA_024591935.1	JAKTJS000000000		SAMN26133681	ES-LK4-063	[Clostridium] innocuum
GCA_024591855.1	JAKTJU000000000		SAMN26133686	ES-NU1-AC-004v	[Clostridium] innocuum
GCA_024591885.1	JAKTJX000000000		SAMN26133691	ES-NU1-AC-019v	[Clostridium] innocuum
GCA_024591875.1	JAKTJT000000000		SAMN26133685	ES-NU1-AC-001	[Clostridium] innocuum
GCA_024591865.1	JAKTJV000000000		SAMN26133689	ES-NU1-AC-012L	[Clostridium] innocuum
GCA_024591835.1	JAKTJW000000000		SAMN26133690	ES-NU1-AC-013L	[Clostridium] innocuum
GCA_024591815.1	JAKTJY000000000		SAMN26133692	ES-NU1-AC-020v	[Clostridium] innocuum
GCA_024591795.1	JAKTJZ000000000		SAMN26133694	ES-NU1-AC-024s	[Clostridium] innocuum
GCA_024591745.1	JAKTKC000000000		SAMN26133702	ES-NU1-AC-041v	[Clostridium] innocuum
GCA_024591755.1	JAKTKA000000000		SAMN26133700	ES-NU1-AC-037v	[Clostridium] innocuum
GCA_024591735.1	JAKTKD000000000		SAMN26133703	ES-NU1-AC-043	[Clostridium] innocuum
GCA_024591715.1	JAKTKB000000000		SAMN26133701	ES-NU1-AC-039	[Clostridium] innocuum
GCA_024591695.1	JAKTKE000000000		SAMN26133704	ES-NU1-AC-044v	[Clostridium] innocuum
GCA_024591665.1	JAKTKF000000000		SAMN26133705	ES-NU1-AC-045v	[Clostridium] innocuum
GCA_024591655.1	JAKTKH000000000		SAMN26133707	ES-NU1-AC-050v	[Clostridium] innocuum
GCA_024591625.1	JAKTKG000000000		SAMN26133706	ES-NU1-AC-047v	[Clostridium] innocuum
GCA_024591615.1	JAKTKI000000000		SAMN26133708	ES-NU1-AC-055v	[Clostridium] innocuum
GCA_024591595.1	JAKTKJ000000000		SAMN26133709	ES-NU1-AC-058v	[Clostridium] innocuum
GCA_024591545.1	JAKTKK000000000		SAMN26133710	ES-NU1-AC-060v	[Clostridium] innocuum
GCA_024591565.1	JAKTKM000000000		SAMN26133712	ES-NU1-AC-069v	[Clostridium] innocuum
GCA_024591535.1	JAKTKL000000000		SAMN26133711	ES-NU1-AC-063L	[Clostridium] innocuum
GCA_024591505.1	JAKTKO000000000		SAMN26133719	ES-NU1-N-042V	[Clostridium] innocuum
GCA_024591495.1	JAKTKN000000000		SAMN26133714	ES-NU1-N-006v	[Clostridium] innocuum
GCA_024591415.1	JAKTKR000000000		SAMN26133724	ES-NU1-P-023v	[Clostridium] innocuum
GCA_024591445.1	JAKTKW000000000		SAMN26133745	ES-NU1-P-099v	[Clostridium] innocuum
GCA_024591435.1	JAKTKP000000000		SAMN26133722	ES-NU1-P-011vL	[Clostridium] innocuum
GCA_024591405.1	JAKTKQ000000000		SAMN26133723	ES-NU1-P-021v	[Clostridium] innocuum
GCA_024591395.1	JAKTKS000000000		SAMN26133725	ES-NU1-P-030v	[Clostridium] innocuum
GCA_024591375.1	JAKTKT000000000		SAMN26133734	ES-NU1-P-075v	[Clostridium] innocuum
GCA_024591345.1	JAKTKV000000000		SAMN26133744	ES-NU1-P-098v	[Clostridium] innocuum
GCA_024591335.1	JAKTKX000000000		SAMN26133746	ES-NU1-P-101v	[Clostridium] innocuum
GCA_024591315.1	JAKTKU000000000		SAMN26133740	ES-NU1-P-088s	[Clostridium] innocuum
GCA_024591295.1	JAKTKY000000000		SAMN26133747	ES-NU1-P-102v	[Clostridium] innocuum
GCA_024591265.1	JAKTLD000000000		SAMN26133638	LK3N-119V	[Clostridium] innocuum
GCA_024591235.1	JAKTLB000000000		SAMN26133633	LK3N-085v	[Clostridium] innocuum
GCA_024591215.1	JAKTKZ000000000		SAMN26133630	LK3N-002v	[Clostridium] innocuum
GCA_024591225.1	JAKTLA000000000		SAMN26133631	LK3N-042v	[Clostridium] innocuum
GCA_024591195.1	JAKTLC000000000		SAMN26133636	LK3N-102	[Clostridium] innocuum
GCA_024591175.1	JAKTLE000000000		SAMN26133639	LK3N-120v	[Clostridium] innocuum
GCA_024591135.1	JAKTLF000000000		SAMN26133640	LK3N-131v	[Clostridium] innocuum
GCA_024591125.1	JAKTLG000000000		SAMN26133642	LK3N-164V	[Clostridium] innocuum
GCA_024591115.1	JAKTLH000000000		SAMN26133645	LK3P-318m	[Clostridium] innocuum
GCA_024591095.1	JAKTLI000000000		SAMN26133646	LK3P-322v	[Clostridium] innocuum
GCA_024591065.1	JAKTLJ000000000		SAMN26133647	LK3P-330v	[Clostridium] innocuum
GCA_024591035.1	JAKTLL000000000		SAMN26133652	LK3P-366v	[Clostridium] innocuum
GCA_024591025.1	JAKTLK000000000		SAMN26133651	LK3P-351	[Clostridium] innocuum
GCA_024591015.1	JAKTLM000000000		SAMN26133653	LK3P-369v	[Clostridium] innocuum
GCA_024590995.1	JAKTLN000000000		SAMN26133659	LK3P-471v	[Clostridium] innocuum
GCA_024590965.1	JAKTLP000000000		SAMN26133672	LK4-030v	[Clostridium] innocuum
GCA_024590955.1	JAKTLO000000000		SAMN26133660	LK3P-473v	[Clostridium] innocuum
GCA_024590925.1	JAKTLR000000000		SAMN26133674	LK4-042v	[Clostridium] innocuum
GCA_024590915.1	JAKTLQ000000000		SAMN26133673	LK4-037v	[Clostridium] innocuum
GCA_024590895.1	JAKTLS000000000		SAMN26133679	LK4-059v	[Clostridium] innocuum
GCA_024590875.1	JAKTLT000000000		SAMN26133682	LK4-066v	[Clostridium] innocuum
GCA_024590855.1	JAKTLU000000000		SAMN26133683	LK4-067v	[Clostridium] innocuum
GCA_024590825.1	JAKTLV000000000		SAMN26133684	LK4-084v	[Clostridium] innocuum
GCA_024590815.1	JAKTLW000000000		SAMN26133687	NU1-AC-005	[Clostridium] innocuum
GCA_024590795.1	JAKTMC000000000		SAMN26133698	NU1-AC-032	[Clostridium] innocuum
GCA_024590775.1	JAKTLX000000000		SAMN26133688	NU1-AC-006	[Clostridium] innocuum
GCA_024590755.1	JAKTLZ000000000		SAMN26133695	NU1-AC-027	[Clostridium] innocuum
GCA_024590735.1	JAKTLY000000000		SAMN26133693	NU1-AC-022v	[Clostridium] innocuum
GCA_024590715.1	JAKTMB000000000		SAMN26133697	NU1-AC-030v	[Clostridium] innocuum
GCA_024590695.1	JAKTMA000000000		SAMN26133696	NU1-AC-029v	[Clostridium] innocuum
GCA_024590655.1	JAKTME000000000		SAMN26133713	NU1-N-003	[Clostridium] innocuum
GCA_024590665.1	JAKTMD000000000		SAMN26133699	NU1-AC-033v	[Clostridium] innocuum
GCA_024590625.1	JAKTMG000000000		SAMN26133716	NU1-N-016v	[Clostridium] innocuum
GCA_024590615.1	JAKTMF000000000		SAMN26133715	NU1-N-014v	[Clostridium] innocuum
GCA_024590595.1	JAKTMM000000000		SAMN26133727	NU1-P-036v	[Clostridium] innocuum
GCA_024590565.1	JAKTMH000000000		SAMN26133717	NU1-N-024v	[Clostridium] innocuum
GCA_024590555.1	JAKTMI000000000		SAMN26133718	NU1-N-037v	[Clostridium] innocuum
GCA_024590515.1	JAKTML000000000		SAMN26133726	NU1-P-034vL	[Clostridium] innocuum
GCA_024590525.1	JAKTMK000000000		SAMN26133721	NU1-N-084	[Clostridium] innocuum
GCA_024590495.1	JAKTMJ000000000		SAMN26133720	NU1-N-083v	[Clostridium] innocuum
GCA_024590475.1	JAKTMN000000000		SAMN26133728	NU1-P-048v	[Clostridium] innocuum
GCA_024590435.1	JAKTMO000000000		SAMN26133729	NU1-P-056vs	[Clostridium] innocuum
GCA_012317185.1		1	SAMN14089795	ATCC 14501	[Clostridium] innocuum
GCA_012271835.1		1	SAMN14089789	LC-LUMC-CI-001	[Clostridium] innocuum

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	1135

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[Clostridium] innocuum

Clostridium innocuum as an emerging multidrug-resistant antibiotic-associated diarrheal pathogen

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