Bacteria (ID 203445) - BioProject

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Accession: PRJNA203445 ID: 203445

Bacteria

Major food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing

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This project is a component of the 100K Food Pathogen Project

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5 additional projects are components of the 100K Food Pathogen Project.

University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. More...

Accession	PRJNA203445
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 3) Less...	Camorlinga-Ponce M et al., "Phenotypic and Genotypic Antibiotic Resistance Patterns in Helicobacter pylori Strains From Ethnically Diverse Population in México.", Front Cell Infect Microbiol, 2020;10:539115 More... Camorlinga-Ponce M et al., "Phenotypic and Genotypic Antibiotic Resistance Patterns in Helicobacter pylori Strains From Ethnically Diverse Population in México.", Front Cell Infect Microbiol, 2020;10:539115 Taff CC et al., "Influence of Host Ecology and Behavior on Campylobacter jejuni Prevalence and Environmental Contamination Risk in a Synanthropic Wild Bird Species.", Appl Environ Microbiol, 2016 Aug 1;82(15):4811-20 Lüdeke CH et al., "Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus.", Genome Announc, 2015 Mar 26;3(2) Less...
Submission	Registration date: 30-Sep-2016 University of California at Davis
NCBI Links	Modification data for SAMN02179883 Modification data for SAMN02203128 More... Modification data for SAMN02179883 Modification data for SAMN02203128 Modification data for SAMN02203125 Modification data for SAMN02203129 Modification data for SAMN02203130 Modification data for SAMN02203126 Modification data for SAMN02203127 Modification data for SAMN02203122 Modification data for SAMN02203124 Modification data for SAMN02203123 Modification data for SAMN02179884 Modification data for SAMN02179882 Less...
Related Resources	100K Foodborne Pathogen Genome Project at University of California at Davis NCBI Pathogen FTP
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	566188
WGS master	2225
Genomic DNA	49
SRA Experiments	4842
Protein Sequences	1679651
Publications
PubMed	3
PMC	3
Other datasets
BioSample	5358
Assembly	2258
Supplementary data
Base modification	37

Assembly details:

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Assembly level

Number of Assemblies

1
20
33
125
179

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_036765175.1	JAJMQX000000000		SAMN21923239	664	Clostridioides difficile
GCA_036711705.1	JAJBWL000000000		SAMN21923251	MS12	Clostridioides difficile
GCA_036699395.1	JAJBZE000000000		SAMN21923161	19	Clostridioides difficile
GCA_036699375.1	JAJBZD000000000		SAMN21923162	24	Clostridioides difficile
GCA_036699355.1	JAJBZC000000000		SAMN21923163	25	Clostridioides difficile
GCA_036699335.1	JAJBZB000000000		SAMN21923164	29	Clostridioides difficile
GCA_036699315.1	JAJBZA000000000		SAMN21923165	36	Clostridioides difficile
GCA_036699295.1	JAJBYZ000000000		SAMN21923166	37	Clostridioides difficile
GCA_036699275.1	JAJBYY000000000		SAMN21923168	41	Clostridioides difficile
GCA_036699255.1	JAJBYX000000000		SAMN21923169	47	Clostridioides difficile
GCA_036699235.1	JAJBYV000000000		SAMN21923173	82	Clostridioides difficile
GCA_036699215.1	JAJBYU000000000		SAMN21923174	85	Clostridioides difficile
GCA_036699195.1	JAJBYW000000000		SAMN21923171	66	Clostridioides difficile
GCA_036699175.1	JAJBYT000000000		SAMN21923175	91	Clostridioides difficile
GCA_036699155.1	JAJBYS000000000		SAMN21923177	103	Clostridioides difficile
GCA_036699135.1	JAJBYQ000000000		SAMN21923180	111	Clostridioides difficile
GCA_036699115.1	JAJBYR000000000		SAMN21923179	110	Clostridioides difficile
GCA_036699095.1	JAJBYO000000000		SAMN21923182	129	Clostridioides difficile
GCA_036699075.1	JAJBYP000000000		SAMN21923181	128	Clostridioides difficile
GCA_036699055.1	JAJBYN000000000		SAMN21923183	138	Clostridioides difficile
GCA_036699035.1	JAJBYM000000000		SAMN21923184	140	Clostridioides difficile
GCA_036699015.1	JAJBYJ000000000		SAMN21923188	160	Clostridioides difficile
GCA_036698995.1	JAJBYL000000000		SAMN21923186	146	Clostridioides difficile
GCA_036698975.1	JAJBYI000000000		SAMN21923189	166	Clostridioides difficile
GCA_036698955.1	JAJBYK000000000		SAMN21923187	148	Clostridioides difficile
GCA_036698935.1	JAJBYG000000000		SAMN21923193	184	Clostridioides difficile
GCA_036698915.1	JAJBYH000000000		SAMN21923190	167	Clostridioides difficile
GCA_036698895.1	JAJBYF000000000		SAMN21923197	205	Clostridioides difficile
GCA_036698875.1	JAJBYE000000000		SAMN21923198	232	Clostridioides difficile
GCA_036698855.1	JAJBYD000000000		SAMN21923199	253	Clostridioides difficile
GCA_036698835.1	JAJBYC000000000		SAMN21923203	275	Clostridioides difficile
GCA_036698815.1	JAJBXZ000000000		SAMN21923207	295	Clostridioides difficile
GCA_036698795.1	JAJBYA000000000		SAMN21923205	285	Clostridioides difficile
GCA_036698775.1	JAJBYB000000000		SAMN21923204	281	Clostridioides difficile
GCA_036698735.1	JAJBXW000000000		SAMN21923210	322	Clostridioides difficile
GCA_036698745.1	JAJBXY000000000		SAMN21923208	299	Clostridioides difficile
GCA_036698715.1	JAJBXU000000000		SAMN21923212	336	Clostridioides difficile
GCA_036698685.1	JAJBXV000000000		SAMN21923211	330	Clostridioides difficile
GCA_036698665.1	JAJBXT000000000		SAMN21923214	365	Clostridioides difficile
GCA_036698645.1	JAJBXX000000000		SAMN21923209	300	Clostridioides difficile
GCA_036698635.1	JAJBXS000000000		SAMN21923215	367	Clostridioides difficile
GCA_036698615.1	JAJBXR000000000		SAMN21923217	379	Clostridioides difficile
GCA_036698565.1	JAJBXP000000000		SAMN21923219	392	Clostridioides difficile
GCA_036698555.1	JAJBXM000000000		SAMN21923222	429	Clostridioides difficile
GCA_036698575.1	JAJBXQ000000000		SAMN21923218	391	Clostridioides difficile
GCA_036698535.1	JAJBXO000000000		SAMN21923220	395	Clostridioides difficile
GCA_036698515.1	JAJBXN000000000		SAMN21923221	424	Clostridioides difficile
GCA_036698495.1	JAJBXL000000000		SAMN21923223	432	Clostridioides difficile
GCA_036698445.1	JAJBXJ000000000		SAMN21923226	479	Clostridioides difficile
GCA_036698465.1	JAJBXK000000000		SAMN21923225	458	Clostridioides difficile
GCA_036698425.1	JAJBXH000000000		SAMN21923228	501	Clostridioides difficile
GCA_036698415.1	JAJBXG000000000		SAMN21923229	536	Clostridioides difficile
GCA_036698395.1	JAJBXF000000000		SAMN21923230	543	Clostridioides difficile
GCA_036698365.1	JAJBXE000000000		SAMN21923231	582	Clostridioides difficile
GCA_036698345.1	JAJBWV000000000		SAMN21923241	C11	Clostridioides difficile
GCA_036689095.1	JAJMRQ000000000		SAMN21923160	16	Clostridioides difficile
GCA_036689075.1	JAJMRN000000000		SAMN21923172	78	Clostridioides difficile
GCA_036689055.1	JAJMRP000000000		SAMN21923167	38	Clostridioides difficile
GCA_036689035.1	JAJMRO000000000		SAMN21923170	61	Clostridioides difficile
GCA_036688945.1	JAJMRI000000000		SAMN21923192	174	Clostridioides difficile
GCA_036688995.1	JAJMRM000000000		SAMN21923176	95	Clostridioides difficile
GCA_036688975.1	JAJMRJ000000000		SAMN21923191	171	Clostridioides difficile
GCA_036688955.1	JAJMRK000000000		SAMN21923185	144	Clostridioides difficile
GCA_036688925.1	JAJMRH000000000		SAMN21923194	186	Clostridioides difficile
GCA_036688905.1	JAJMRF000000000		SAMN21923196	197	Clostridioides difficile
GCA_036688865.1	JAJMRG000000000		SAMN21923195	191	Clostridioides difficile
GCA_036688855.1	JAJMRE000000000		SAMN21923200	267	Clostridioides difficile
GCA_036688845.1	JAJMRC000000000		SAMN21923202	271	Clostridioides difficile
GCA_036688825.1	JAJMRD000000000		SAMN21923201	268	Clostridioides difficile
GCA_036688795.1	JAJMRB000000000		SAMN21923206	291	Clostridioides difficile
GCA_036688765.1	JAJMQY000000000		SAMN21923224	457	Clostridioides difficile
GCA_036688745.1	JAJMRA000000000		SAMN21923213	361	Clostridioides difficile
GCA_036688735.1	JAJMQZ000000000		SAMN21923216	375	Clostridioides difficile
GCA_036697835.1	JAJBWJ000000000		SAMN21923253	MS15	Clostridioides difficile
GCA_036697815.1	JAJBWM000000000		SAMN21923250	MS11	Clostridioides difficile
GCA_036698235.1	JAJBXI000000000		SAMN21923227	492	Clostridioides difficile
GCA_036698215.1	JAJBXD000000000		SAMN21923232	591	Clostridioides difficile
GCA_036698195.1	JAJBXC000000000		SAMN21923233	597	Clostridioides difficile
GCA_036698145.1	JAJBWZ000000000		SAMN21923236	636	Clostridioides difficile
GCA_036698175.1	JAJBXB000000000		SAMN21923234	632	Clostridioides difficile
GCA_036698135.1	JAJBXA000000000		SAMN21923235	635	Clostridioides difficile
GCA_036698115.1	JAJBWY000000000		SAMN21923237	653	Clostridioides difficile
GCA_036698095.1	JAJBWX000000000		SAMN21923238	656	Clostridioides difficile
GCA_036698075.1	JAJBWT000000000		SAMN21923243	C16	Clostridioides difficile
GCA_036698035.1	JAJBWW000000000		SAMN21923240	C03	Clostridioides difficile
GCA_036698025.1	JAJBWS000000000		SAMN21923244	C18	Clostridioides difficile
GCA_036698015.1	JAJBWU000000000		SAMN21923242	C13	Clostridioides difficile
GCA_036697995.1	JAJBWR000000000		SAMN21923245	C20	Clostridioides difficile
GCA_036697975.1	JAJBWP000000000		SAMN21923247	MS04	Clostridioides difficile
GCA_036697925.1	JAJBWN000000000		SAMN21923249	MS10	Clostridioides difficile
GCA_036697935.1	JAJBWQ000000000		SAMN21923246	C05	Clostridioides difficile
GCA_036697915.1	JAJBWO000000000		SAMN21923248	MS08	Clostridioides difficile
GCA_036697895.1	JAJBWK000000000		SAMN21923252	MS14	Clostridioides difficile
GCA_036689015.1	JAJMRL000000000		SAMN21923178	107	Clostridium paraputrificum
GCA_008281125.1		1	SAMN09935061	C-Mx-2010-12	Helicobacter pylori
GCA_008027395.1		1	SAMN09935062	C-Mx-2010-3	Helicobacter pylori
GCA_008027235.1		1	SAMN09935063	C-Mx-2010-5	Helicobacter pylori
GCA_008026995.1		4	SAMN09935059	C-Mx-2010-8	Helicobacter pylori
GCA_008026815.1		2	SAMN09935056	C-Mx-2011-145	Helicobacter pylori
GCA_008026615.1		1	SAMN09935057	C-Mx-2011-171	Helicobacter pylori
GCA_008026375.1		2	SAMN09935060	C-Mx-2011-152	Helicobacter pylori
GCA_008032935.1		1	SAMN09935052	G-Mx-2006-583	Helicobacter pylori
GCA_008032955.1		2	SAMN09935046	G-Mx-2006-46	Helicobacter pylori
GCA_008033055.1		1	SAMN09935045	G-Mx-2003-250	Helicobacter pylori
GCA_008033075.1		2	SAMN09935047	G-Mx-2003-108	Helicobacter pylori
GCA_008033035.1		1	SAMN09935048	G-Mx-2003-93	Helicobacter pylori
GCA_008033015.1		1	SAMN09935049	G-Mx-2005-108	Helicobacter pylori
GCA_008032975.1		1	SAMN09935051	G-Mx-2006-152	Helicobacter pylori
GCA_008032995.1		1	SAMN09935050	G-Mx-2005-337	Helicobacter pylori
GCA_008032735.1		1	SAMN09935055	C-Mx-2010-97	Helicobacter pylori
GCA_008032615.1		1	SAMN09935053	G-Mx-2011-124	Helicobacter pylori
GCA_008032475.1		1	SAMN09935054	G-Mx-2011-147	Helicobacter pylori
GCA_008027775.1		2	SAMN09935058	C-Mx-2008-31	Helicobacter pylori
GCA_008026175.1		2	SAMN09935064	C-Mx-2011-69	Helicobacter pylori
GCA_011140925.1	SGAL00000000		SAMN10881945	G-Mx-2005-107	Helicobacter pylori
GCA_011140915.1	SGAJ00000000		SAMN10881947	G-Mx-2006-513	Helicobacter pylori
GCA_011140995.1	SGAN00000000		SAMN10881943	G-Mx-2011-41	Helicobacter pylori
GCA_011140955.1	SGAM00000000		SAMN10881944	G-Mx-2003-136	Helicobacter pylori
GCA_011140935.1	SGAK00000000		SAMN10881946	G-Mx-2006-4	Helicobacter pylori
GCA_011141055.1	SGAR00000000		SAMN10881939	G-Mx-2005-109	Helicobacter pylori
GCA_011141045.1	SGAP00000000		SAMN10881941	G-Mx-2006-53	Helicobacter pylori
GCA_011141035.1	SGAQ00000000		SAMN10881940	G-Mx-2005-70	Helicobacter pylori
GCA_011141015.1	SGAO00000000		SAMN10881942	G-Mx-2011-131	Helicobacter pylori
GCA_011141145.1	SGAU00000000		SAMN10881936	G-Mx-2005-100	Helicobacter pylori
GCA_011141135.1	SGAV00000000		SAMN10881935	G-Mx-2003-356	Helicobacter pylori
GCA_011141115.1	SGAT00000000		SAMN10881937	G-Mx-2005-104	Helicobacter pylori
GCA_011141095.1	SGAS00000000		SAMN10881938	G-Mx-2010-64	Helicobacter pylori
GCA_011140895.1	SGAI00000000		SAMN10881948	G-Mx-2010-13	Helicobacter pylori
GCA_011140875.1	SGAG00000000		SAMN10881950	M-Mx-2011-113	Helicobacter pylori
GCA_011140845.1	SGAH00000000		SAMN10881949	G-Mx-2010-99	Helicobacter pylori
GCA_011140825.1	SGAF00000000		SAMN10881951	M-Mx-2003-230	Helicobacter pylori
GCA_011140805.1	SGAD00000000		SAMN10881953	M-Mx-2005-115	Helicobacter pylori
GCA_011140795.1	SGAE00000000		SAMN10881952	M-Mx-2005-106	Helicobacter pylori
GCA_011140755.1	SGAC00000000		SAMN10881954	M-Mx-2005-119	Helicobacter pylori
GCA_011140745.1	SGAB00000000		SAMN10881955	M-Mx-2005-152	Helicobacter pylori
GCA_011140735.1	SGAA00000000		SAMN10881956	M-Mx-2006-196	Helicobacter pylori
GCA_011140715.1	SFZZ00000000		SAMN10881957	M-Mx-2006-276	Helicobacter pylori
GCA_011140675.1	SFZW00000000		SAMN10881960	M-Mx-2006-690	Helicobacter pylori
GCA_011140655.1	SFZX00000000		SAMN10881959	M-Mx-2006-416	Helicobacter pylori
GCA_011140665.1	SFZY00000000		SAMN10881958	M-Mx-2006-427	Helicobacter pylori
GCA_011140625.1	SFZV00000000		SAMN10881961	M-Mx-2008-34	Helicobacter pylori
GCA_011140615.1	SFZU00000000		SAMN10881962	C-Mx-2005-33	Helicobacter pylori
GCA_011140545.1	SFZR00000000		SAMN10881965	C-Mx-2010-10	Helicobacter pylori
GCA_011140595.1	SFZS00000000		SAMN10881964	C-Mx-2006-577	Helicobacter pylori
GCA_011140555.1	SFZT00000000		SAMN10881963	C-Mx-2006-52	Helicobacter pylori
GCA_011140535.1	SFZQ00000000		SAMN10881966	C-Mx-2010-103	Helicobacter pylori
GCA_011140515.1	SFZP00000000		SAMN10881967	C-Mx-2010-2	Helicobacter pylori
GCA_011140475.1	SFZM00000000		SAMN10881970	C-Mx-2006-677	Helicobacter pylori
GCA_011140485.1	SFZL00000000		SAMN10881971	C-Mx-2010-11	Helicobacter pylori
GCA_011140425.1	SFZO00000000		SAMN10881968	C-Mx-2006-356	Helicobacter pylori
GCA_011140435.1	SFZN00000000		SAMN10881969	C-Mx-2006-664	Helicobacter pylori
GCA_011140415.1	SFZK00000000		SAMN10881972	C-Mx-2010-100	Helicobacter pylori
GCA_011140365.1	SFZJ00000000		SAMN10881973	C-Mx-2011-117	Helicobacter pylori
GCA_011140335.1	SFZI00000000		SAMN10881974	C-Mx-2011-136	Helicobacter pylori
GCA_017595085.1	JAALOB000000000		SAMN14206536	MX-2017-20	Helicobacter pylori
GCA_017595035.1	JAALOA000000000		SAMN14206537	MX-2017-27	Helicobacter pylori
GCA_017595025.1	JAALNZ000000000		SAMN14206539	MX-2017-38	Helicobacter pylori
GCA_017595005.1	JAALNY000000000		SAMN14206540	MX-2017-44	Helicobacter pylori
GCA_017594985.1	JAALNV000000000		SAMN14206543	MX-2017-69	Helicobacter pylori
GCA_017594965.1	JAALNX000000000		SAMN14206541	MX-2017-54	Helicobacter pylori
GCA_017594945.1	JAALNW000000000		SAMN14206542	MX-2017-58	Helicobacter pylori
GCA_017594925.1	JAALNT000000000		SAMN14206545	MX-2017-105	Helicobacter pylori
GCA_017594905.1	JAALNR000000000		SAMN14206549	MX-2017-149	Helicobacter pylori
GCA_017594885.1	JAALNU000000000		SAMN14206544	MX-2017-78	Helicobacter pylori
GCA_017594855.1	JAALNS000000000		SAMN14206546	MX-2017-107	Helicobacter pylori
GCA_017594845.1	JAALNP000000000		SAMN14206552	MX-2017-161	Helicobacter pylori
GCA_017594815.1	JAALNO000000000		SAMN14206556	MX-2017-192	Helicobacter pylori
GCA_017594805.1	JAALNQ000000000		SAMN14206550	MX-2017-151	Helicobacter pylori
GCA_017594765.1	JAALNN000000000		SAMN14206557	MX-2017-198	Helicobacter pylori
GCA_000438665.2		1	SAMN02203123	J1-108	Listeria monocytogenes
GCA_009925095.1	SDXM00000000		SAMN10686910	BCW_7427	Pseudomonas aeruginosa
GCA_009916345.1	SDSO00000000		SAMN10686911	BCW_7428	Pseudomonas aeruginosa
GCA_009914965.1	SDSQ00000000		SAMN10686913	BCW_7430	Pseudomonas aeruginosa
GCA_009914935.1	SDSP00000000		SAMN10686912	BCW_7429	Pseudomonas soli
GCA_011033135.1	SEII00000000		SAMN10686908	BCW_7425	Staphylococcus aureus
GCA_009916325.1	SDSR00000000		SAMN10686914	BCW_7431	Staphylococcus aureus
GCA_009916405.1	SDSL00000000		SAMN10686906	BCW_7423	Staphylococcus aureus
GCA_009916365.1	SDSM00000000		SAMN10686907	BCW_7424	Staphylococcus aureus
GCA_009915005.1	SDSN00000000		SAMN10686909	BCW_7426	Staphylococcus delphini

SRA Data Details

Parameter	Value
Data volume, Gbases	5,177
Data volume, Tbytes	2.72

Related Project Category: RefseqGenbank

PRJNA212977 : Major food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing

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Bacteria

Major food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing

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