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Accession: PRJNA543109 ID: 543109

Leptospira

Pathogenic Leptospira specimens isolated from rodents in the Caribbean Island of Saint Kitts

Whole genome sequencing of 18 Leptospira specimens isolated from rodents in the Caribbean island of Saint Kitts, including L. More...

Accession	PRJNA543109
Data Type	Genome sequencing and assembly, Raw sequence reads
Scope	Multispecies
Publications	Published online, DOI: 10.3390/ani10020350
Submission	Registration date: 15-May-2019 INDICASAT AIP
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	36
SRA Experiments	18
Protein Sequences	62799
Other datasets
BioSample	18
Assembly	18

Assembly details:

Assembly level

Number of Assemblies

Chromosome

18
18

Assembly	Level	Chrs	BioSample	Strain	Taxonomy
GCA_009884235.1		2	SAMN11389092	R14-L	Leptospira borgpetersenii
GCA_009884215.1		2	SAMN11389085	R6L	Leptospira borgpetersenii
GCA_009884155.1		2	SAMN11389091	R14	Leptospira borgpetersenii
GCA_009858095.1		2	SAMN11389101	Mo4	Leptospira borgpetersenii
GCA_009858075.1		2	SAMN11389084	R6	Leptospira borgpetersenii
GCA_009858055.1		2	SAMN11389099	R28	Leptospira borgpetersenii
GCA_009858035.1		2	SAMN11389098	R23	Leptospira borgpetersenii
GCA_009858015.1		2	SAMN11389100	R29	Leptospira borgpetersenii
GCA_009884135.1		2	SAMN11389089	R13	Leptospira interrogans
GCA_009884115.1		2	SAMN11389093	R16	Leptospira interrogans
GCA_009884095.1		2	SAMN11389097	R22	Leptospira interrogans
GCA_009884075.1		2	SAMN11389096	R21	Leptospira interrogans
GCA_009884055.1		2	SAMN11389094	R17	Leptospira interrogans
GCA_009884035.1		2	SAMN11389090	R13-L	Leptospira interrogans
GCA_009884195.1		2	SAMN11389086	R7	Leptospira interrogans
GCA_009884175.1		2	SAMN11389087	R11	Leptospira interrogans
GCA_009884275.1		2	SAMN11389088	R12	Leptospira interrogans
GCA_009884255.1		2	SAMN11389095	R19	Leptospira interrogans

SRA Data Details

Parameter	Value
Data volume, Gbases	32
Data volume, Mbytes	14398

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