Salmo trutta (ID 550988) - BioProject

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Accession: PRJNA550988 ID: 550988

Salmo trutta (river trout)

Salmo trutta RefSeq Genome

See Genome Information for Salmo trutta

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26 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJEB32115). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA550988
Data Type	RefSeq Genome
Scope	Monoisolate
Organism	Salmo trutta[Taxonomy ID: 8032] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo; Salmo trutta
Publications	Pasquier J et al., "Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.", BMC Genomics, 2016 May 18;17:368 Shum BP et al., "Modes of salmonid MHC class I and II evolution differ from the primate paradigm.", J Immunol, 2001 Mar 1;166(5):3297-308
Submission	Registration date: 2-Jun-2019 Wellcome Sanger Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	104252
Transcript	102772
Protein Sequences	87828
Publications
PubMed	2
PMC	1
Other datasets
BioSample	1

Genome assemblies, organelles and plasmids:

Assembly GCF_901001165.1 :

Name	RefSeq	GenBank
Mitochondrion	NC_024032.1
Chromosome	NC_042957.1	LR584410.1
Chromosome	NC_042958.1	LR584445.1
Chromosome	NC_042959.1	LR584416.1
Chromosome	NC_042960.1	LR584420.1
Chromosome	NC_042961.1	LR584433.1
Chromosome	NC_042962.1	LR584406.1
Chromosome	NC_042963.1	LR584430.1
Chromosome	NC_042964.1	LR584407.1
Chromosome	NC_042965.1	LR584409.1
Chromosome	NC_042966.1	LR584419.1
Chromosome	NC_042967.1	LR584438.1
Chromosome	NC_042968.1	LR584441.1
Chromosome	NC_042969.1	LR584428.1
Chromosome	NC_042970.1	LR584411.1
Chromosome	NC_042971.1	LR584415.1
Chromosome	NC_042972.1	LR584431.1
Chromosome	NC_042973.1	LR584426.1
Chromosome	NC_042974.1	LR584435.1
Chromosome	NC_042975.1	LR584427.1
Chromosome	NC_042976.1	LR584429.1
Chromosome	NC_042977.1	LR584437.1
Chromosome	NC_042978.1	LR584440.1
Chromosome	NC_042979.1	LR584421.1
Chromosome	NC_042980.1	LR584412.1
Chromosome	NC_042981.1	LR584436.1
Chromosome	NC_042982.1	LR584439.1
Chromosome	NC_042983.1	LR584424.1
Chromosome	NC_042984.1	LR584422.1
Chromosome	NC_042985.1	LR584418.1
Chromosome	NC_042986.1	LR584432.1
Chromosome	NC_042987.1	LR584423.1
Chromosome	NC_042988.1	LR584408.1
Chromosome	NC_042989.1	LR584414.1
Chromosome	NC_042990.1	LR584434.1
Chromosome	NC_042991.1	LR584444.1
Chromosome	NC_042992.1	LR584442.1
Chromosome	NC_042993.1	LR584417.1
Chromosome	NC_042994.1	LR584425.1
Chromosome	NC_042995.1	LR584413.1
Chromosome	NC_042996.1	LR584443.1
Whole Genome Shotgun Assembly		CAAJIE000000000

Related GenBank Project

PRJEB32115 : Salmo trutta (brown trout) genome assembly, fSalTru1

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Salmo trutta (river trout)

Salmo trutta RefSeq Genome

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