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Accession: PRJNA313928 ID: 313928

Salmonella enterica

FDA-CFSAN Salmonella isolated from environmental sources in Northwest Mexico

See Genome Information for Salmonella enterica
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.
AccessionPRJNA313928
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 7-Dec-2018
FDA
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)245
WGS master241
Genomic DNA4
SRA Experiments251
Protein Sequences13557
Other datasets
BioSample245
Assembly244
Assembly details:
Assembly levelNumber of Assemblies
3
241
244
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_006297725.1ContigAAFBZL000000000
SAMN11954918
CFSAN047352
GCA_006395395.1ContigAAFGYJ000000000
SAMN11956128
CFSAN047351
GCA_006394965.1ContigAAFGYW000000000
SAMN11958488
CFSAN047350
GCA_006394855.1ContigAAFGYV000000000
SAMN11958154
CFSAN047349
GCA_005930995.1Complete genomeSAMN10261267
5
GCA_005457265.2Complete genomeSAMN10261265
3
GCA_003902395.2Complete genomeSAMN10261268
7
GCA_005898165.1ContigAAEAHK000000000
SAMN10261455
AV13
GCA_005898205.1ContigAAEAHI000000000
SAMN10261500
FV06
GCA_005898175.1ContigAAEAHJ000000000
SAMN10261441
AG03
GCA_005898145.1ContigAAEAGP000000000
SAMN10261502
FV08
GCA_005898085.1ContigAAEAHL000000000
SAMN10261478
DV05
GCA_005898045.1ContigAAEAHE000000000
SAMN10261479
DV06
GCA_005897985.1ContigAAEAHF000000000
SAMN10261477
DV03
GCA_005897835.1ContigAAEAGS000000000
SAMN10261436
AC07
GCA_005897775.1ContigAAEAGQ000000000
SAMN10261498
FV03
GCA_005897765.1ContigAAEAGO000000000
SAMN10261505
FV13
GCA_005897745.1ContigAAEAGR000000000
SAMN10261475
DV01
GCA_005897485.1ContigAAEAFC000000000
SAMN10261445
AG08
GCA_005897465.1ContigAAEAEW000000000
SAMN10261440
AG02
GCA_005897385.1ContigAAEAFA000000000
SAMN10261457
BG02
GCA_005897365.1ContigAAEAHM000000000
SAMN10261442
AG05
GCA_005897135.1ContigAAEAEP000000000
SAMN10261485
EV04
GCA_005897125.1ContigAAEAFV000000000
SAMN10261443
AG06
GCA_005897045.1ContigAAEAFS000000000
SAMN10261504
FV11
GCA_005897025.1ContigAAEAFY000000000
SAMN10261444
AG07
GCA_005896945.1ContigAAEAFQ000000000
SAMN10261437
AC12
GCA_005896845.1ContigAAEAFR000000000
SAMN10261463
BG08
GCA_005895955.1ContigAAEADK000000000
SAMN10261480
DV11
GCA_005896705.1ContigAAEAEM000000000
SAMN10261501
FV07
GCA_005896625.1ContigAAEADL000000000
SAMN10261499
FV04
GCA_005896605.1ContigAAEAEE000000000
SAMN10261474
DC08
GCA_005896585.1ContigAAEAEK000000000
SAMN10261435
AC06
GCA_005896565.1ContigAAEAEJ000000000
SAMN10261434
AC05
GCA_005896545.1ContigAAEAEI000000000
SAMN10261476
DV02
GCA_005783925.1ContigAADUTL000000000
SAMN10261470
DC03
GCA_005783885.1ContigAADUTK000000000
SAMN10261461
BG06
GCA_005783365.1ContigAADUTN000000000
SAMN10261468
BV08
GCA_005783305.1ContigAADUTJ000000000
SAMN10261438
AC15
GCA_005783245.1ContigAADUTM000000000
SAMN10261465
BV03
GCA_005783165.1ContigAADUTG000000000
SAMN10261484
EV03
GCA_005793915.1ContigAADUXF000000000
SAMN10261284
24
GCA_005795705.1ContigAADUWM000000000
SAMN10261353
117
GCA_005795685.1ContigAADUWI000000000
SAMN10261347
111
GCA_005795665.1ContigAADUWL000000000
SAMN10261413
290
GCA_005795645.1ContigAADUWP000000000
SAMN10261350
114
GCA_005795625.1ContigAADUXA000000000
SAMN10261291
31
GCA_005795595.1ContigAADUWQ000000000
SAMN10261399
261
GCA_005795585.1ContigAADUWK000000000
SAMN10261345
108
GCA_005795565.1ContigAADUWX000000000
SAMN10261368
136
GCA_005795545.1ContigAADUXC000000000
SAMN10261383
152
GCA_005795325.1ContigAADUWU000000000
SAMN10261310
60
GCA_005795285.1ContigAADUWV000000000
SAMN10261295
36
GCA_005795245.1ContigAADUXH000000000
SAMN10261280
20
GCA_005795225.1ContigAADUXB000000000
SAMN10261328
82
GCA_005795205.1ContigAADUWT000000000
SAMN10261306
54
GCA_005795185.1ContigAADUWH000000000
SAMN10261302
48
GCA_005795165.1ContigAADUWY000000000
SAMN10261269
8
GCA_005795145.1ContigAADUWO000000000
SAMN10261303
49
GCA_005795065.1ContigAADUWW000000000
SAMN10261369
137
GCA_005794985.1ContigAADUWS000000000
SAMN10261365
133
GCA_005794965.1ContigAADUWZ000000000
SAMN10261335
94
GCA_005794945.1ContigAADUWR000000000
SAMN10261391
162
GCA_005794345.1ContigAADUXK000000000
SAMN10261356
120
GCA_005794185.1ContigAADUXE000000000
SAMN10261279
18
GCA_005794045.1ContigAADUXD000000000
SAMN10261432
312
GCA_005794025.1ContigAADUXI000000000
SAMN10261340
102
GCA_005696975.1ContigAADOWB000000000
SAMN10261458
BG03
GCA_005696915.1ContigAADOZI000000000
SAMN10261385
156
GCA_005696895.1ContigAADOZL000000000
SAMN10261290
30
GCA_005696835.1ContigAADOZM000000000
SAMN10261324
76
GCA_005696795.1ContigAADOWC000000000
SAMN10261466
BV05
GCA_005696615.1ContigAADOWE000000000
SAMN10261494
FC05
GCA_005696175.1ContigAADOZN000000000
SAMN10261305
52
GCA_005696075.1ContigAADOZH000000000
SAMN10261394
167
GCA_005695895.1ContigAADOZK000000000
SAMN10261293
33
GCA_005698415.1ContigAADOZR000000000
SAMN10261342
104
GCA_005698395.1ContigAADOZE000000000
SAMN10261304
50
GCA_005698375.1ContigAADOZO000000000
SAMN10261307
55
GCA_005698355.1ContigAADOYV000000000
SAMN10261410
286
GCA_005698335.1ContigAADOZG000000000
SAMN10261285
25
GCA_005698315.1ContigAADOZA000000000
SAMN10261274
13
GCA_005698295.1ContigAADOZC000000000
SAMN10261296
37
GCA_005698275.1ContigAADOZD000000000
SAMN10261300
46
GCA_005698195.1ContigAADOZJ000000000
SAMN10261298
42
GCA_005698135.1ContigAADOZF000000000
SAMN10261422
302
GCA_005698145.1ContigAADOYY000000000
SAMN10261407
282
GCA_005698095.1ContigAADOZB000000000
SAMN10261409
285
GCA_005698645.1ContigAADOZX000000000
SAMN10261357
121
GCA_005698635.1ContigAADOZY000000000
SAMN10261355
119
GCA_005698615.1ContigAADPAB000000000
SAMN10261364
132
GCA_005698595.1ContigAADOZV000000000
SAMN10261425
305
GCA_005698575.1ContigAADPAA000000000
SAMN10261359
127
GCA_005698555.1ContigAADOZQ000000000
SAMN10261271
10
GCA_005698535.1ContigAADOZW000000000
SAMN10261282
22
GCA_005698515.1ContigAADOZU000000000
SAMN10261337
98
GCA_005698495.1ContigAADOZP000000000
SAMN10261404
277
GCA_005698475.1ContigAADOZZ000000000
SAMN10261426
306
GCA_005698455.1ContigAADOZT000000000
SAMN10261341
103
GCA_005698435.1ContigAADOZS000000000
SAMN10261382
151
GCA_005626015.1ContigAADJSJ000000000
SAMN10261358
122
GCA_005626035.1ContigAADJSK000000000
SAMN10261276
15
GCA_005625995.1ContigAADJSI000000000
SAMN10261281
21
GCA_005625975.1ContigAADJSE000000000
SAMN10261430
310
GCA_005625955.1ContigAADJSD000000000
SAMN10261428
308
GCA_005625935.1ContigAADJSH000000000
SAMN10261326
79
GCA_005625905.1ContigAADJSG000000000
SAMN10261334
90
GCA_005625895.1ContigAADJSF000000000
SAMN10261333
88
GCA_005625875.1ContigAADJSA000000000
SAMN10261376
145
GCA_005625855.1ContigAADJSB000000000
SAMN10261339
101
GCA_005625835.1ContigAADJSC000000000
SAMN10261344
106
GCA_005625815.1ContigAADJRX000000000
SAMN10261372
140
GCA_005625795.1ContigAADJRW000000000
SAMN10261367
135
GCA_005625775.1ContigAADJRY000000000
SAMN10261313
63
GCA_005625755.1ContigAADJRV000000000
SAMN10261397
170
GCA_005625735.1ContigAADJRZ000000000
SAMN10261401
271
GCA_005625715.1ContigAADJRU000000000
SAMN10261402
272
GCA_005625695.1ContigAADJRS000000000
SAMN10261403
275
GCA_005625655.1ContigAADJRT000000000
SAMN10261321
73
GCA_005625675.1ContigAADJRQ000000000
SAMN10261392
163
GCA_005625635.1ContigAADJRR000000000
SAMN10261388
159
GCA_005625615.1ContigAADJRP000000000
SAMN10261386
157
GCA_005625555.1ContigAADJRO000000000
SAMN10261289
29
GCA_005625595.1ContigAADJRN000000000
SAMN10261294
35
GCA_005625575.1ContigAADJRI000000000
SAMN10261416
295
GCA_005625535.1ContigAADJRJ000000000
SAMN10261419
299
GCA_005625495.1ContigAADJRL000000000
SAMN10261299
45
GCA_005625515.1ContigAADJRM000000000
SAMN10261405
278
GCA_005625475.1ContigAADJRK000000000
SAMN10261351
115
GCA_005625455.1ContigAADJRF000000000
SAMN10261354
118
GCA_005625435.1ContigAADJRG000000000
SAMN10261266
4
GCA_005624435.1ContigAADJPK000000000
SAMN10261472
DC05
GCA_005624415.1ContigAADJPM000000000
SAMN10261467
BV06
GCA_005624395.1ContigAADJPG000000000
SAMN10261469
DC02
GCA_005624375.1ContigAADJPA000000000
SAMN10261449
AV03
GCA_005624355.1ContigAADJPE000000000
SAMN10261447
AG14
GCA_005624335.1ContigAADJPC000000000
SAMN10261454
AV12
GCA_005624315.1ContigAADJPF000000000
SAMN10261493
FC04
GCA_005624295.1ContigAADJPB000000000
SAMN10261482
DV13
GCA_005624275.1ContigAADJPD000000000
SAMN10261471
DC04
GCA_005553495.1ContigAADEMA000000000
SAMN10261325
78
GCA_005553475.1ContigAADEMB000000000
SAMN10261360
128
GCA_005553445.1ContigAADEMD000000000
SAMN10261278
17
GCA_005553415.1ContigAADELY000000000
SAMN10261332
87
GCA_005553435.1ContigAADEMF000000000
SAMN10261330
85
GCA_005553395.1ContigAADELX000000000
SAMN10261270
9
GCA_005553355.1ContigAADELW000000000
SAMN10261371
139
GCA_005553365.1ContigAADEMC000000000
SAMN10261431
311
GCA_005553335.1ContigAADELZ000000000
SAMN10261272
11
GCA_005553315.1ContigAADELU000000000
SAMN10261374
142
GCA_005553285.1ContigAADELV000000000
SAMN10261366
134
GCA_005553275.1ContigAADELF000000000
SAMN10261349
113
GCA_005553215.1ContigAADELJ000000000
SAMN10261412
288
GCA_005553255.1ContigAADELT000000000
SAMN10261292
32
GCA_005553175.1ContigAADELH000000000
SAMN10261352
116
GCA_005553115.1ContigAADELI000000000
SAMN10261346
110
GCA_005552135.1ContigAADEIQ000000000
SAMN10261486
EV05
GCA_005551835.1ContigAADELR000000000
SAMN10261288
28
GCA_005551795.1ContigAADELN000000000
SAMN10261423
303
GCA_005551805.1ContigAADELS000000000
SAMN10261373
141
GCA_005551775.1ContigAADELQ000000000
SAMN10261315
66
GCA_005551735.1ContigAADELK000000000
SAMN10261273
12
GCA_005551595.1ContigAADELP000000000
SAMN10261417
296
GCA_005551555.1ContigAADELM000000000
SAMN10261415
294
GCA_005551535.1ContigAADELL000000000
SAMN10261414
293
GCA_005551415.1ContigAADEIK000000000
SAMN10261488
EV07
GCA_005551375.1ContigAADELO000000000
SAMN10261424
304
GCA_005551325.1ContigAADEIO000000000
SAMN10261473
DC07
GCA_005551255.1ContigAADEIL000000000
SAMN10261497
FV01
GCA_005549935.1ContigAADEII000000000
SAMN10261492
FC02
GCA_005526615.1ContigAADCMT000000000
SAMN10261301
47
GCA_005526545.1ContigAADCMP000000000
SAMN10261348
112
GCA_005526515.1ContigAADCMS000000000
SAMN10261338
100
GCA_005457495.1ContigAACXUB000000000
SAMN10261381
150
GCA_005457445.1ContigAACXUC000000000
SAMN10261361
129
GCA_005457385.1ContigAACXTM000000000
SAMN10261408
284
GCA_005457365.1ContigAACXUA000000000
SAMN10261433
314
GCA_005457345.1ContigAACXTS000000000
SAMN10261406
279
GCA_005457315.1ContigAACXUD000000000
SAMN10261379
148
GCA_005457285.1ContigAACXTW000000000
SAMN10261377
146
GCA_005456385.1ContigAACXTZ000000000
SAMN10261380
149
GCA_005456275.1ContigAACXTP000000000
SAMN10261322
74
GCA_005456225.1ContigAACXTU000000000
SAMN10261398
260
GCA_005456205.1ContigAACXTR000000000
SAMN10261319
71
GCA_005456145.1ContigAACXTX000000000
SAMN10261311
61
GCA_005455955.1ContigAACXTT000000000
SAMN10261317
69
GCA_005455865.1ContigAACXTY000000000
SAMN10261378
147
GCA_005455845.1ContigAACXTV000000000
SAMN10261316
67
GCA_005455505.1ContigAACXRI000000000
SAMN10261450
AV04
GCA_005455485.1ContigAACXQX000000000
SAMN10261489
EV09
GCA_005455465.1ContigAACXQV000000000
SAMN10261460
BG05
GCA_005455325.1ContigAACXQQ000000000
SAMN10261456
BG01
GCA_005455305.1ContigAACXQR000000000
SAMN10261491
FC01
GCA_005406645.1ContigAACUDV000000000
SAMN10261483
EV01
GCA_005419455.1ContigAACUYE000000000
SAMN10261327
80
GCA_005418675.1ContigAACUYA000000000
SAMN10261389
160
GCA_005418605.1ContigAACUYD000000000
SAMN10261411
287
GCA_005418575.1ContigAACUXZ000000000
SAMN10261420
300
GCA_005418515.1ContigAACUXY000000000
SAMN10261421
301
GCA_005418495.1ContigAACUYG000000000
SAMN10261343
105
GCA_005418475.1ContigAACUYB000000000
SAMN10261314
65
GCA_005418055.1ContigAACUYI000000000
SAMN10261375
143
GCA_005418035.1ContigAACUYF000000000
SAMN10261427
307
GCA_005417755.1ContigAACUXE000000000
SAMN10261495
FC08
GCA_005409245.1ContigAACUHJ000000000
SAMN10261370
138
GCA_003924755.1ContigRWCL00000000
SAMN10261283
23
GCA_003921895.1ContigRWCF00000000
SAMN10261418
297
GCA_003922135.1ContigRWBS00000000
SAMN10261448
AV01
GCA_003903755.1ContigRUTH00000000
SAMN10261318
70
GCA_003904495.1ContigRUTK00000000
SAMN10261464
BV01
GCA_003920595.1ContigRVZC00000000
SAMN10261331
86
GCA_003920475.1ContigRVZI00000000
SAMN10261384
154
GCA_003915415.1ContigRVMS00000000
SAMN10261451
AV05
GCA_003915355.1ContigRVMV00000000
SAMN10261387
158
GCA_003915305.1ContigRVMR00000000
SAMN10261275
14
GCA_004227585.1ContigAAADDZ000000000
SAMN10261329
84
GCA_004226725.1ContigAAADBT000000000
SAMN10261481
DV12
GCA_004226205.1ContigAAADAJ000000000
SAMN10261362
130
GCA_004225725.1ContigAAADCN000000000
SAMN10261393
164
GCA_004224985.1ContigAAACZG000000000
SAMN10261429
309
GCA_004224565.1ContigAAACYC000000000
SAMN10261503
FV10
GCA_004224485.1ContigAAACYA000000000
SAMN10261439
AG01
GCA_004224365.1ContigAAACXQ000000000
SAMN10261336
95
GCA_004223885.1ContigAAACWD000000000
SAMN10261312
62
GCA_004223725.1ContigAAACVQ000000000
SAMN10261320
72
GCA_004223605.1ContigAAACVR000000000
SAMN10261487
EV06
GCA_004222855.1ContigAAACWE000000000
SAMN10261323
75
GCA_004222765.1ContigAAACXD000000000
SAMN10261452
AV06
GCA_004222385.1ContigAAACTK000000000
SAMN10261490
EV11
GCA_004222025.1ContigAAACTO000000000
SAMN10261396
169
GCA_004221765.1ContigAAACTH000000000
SAMN10261496
FC09
GCA_004221605.1ContigAAACSU000000000
SAMN10261286
26
GCA_004221445.1ContigAAACSS000000000
SAMN10261308
58
GCA_004221285.1ContigAAACUJ000000000
SAMN10261309
59
GCA_004221225.1ContigAAACSA000000000
SAMN10261395
168
GCA_004220075.1ContigAAACPC000000000
SAMN10261446
AG09
GCA_004219965.1ContigAAACOZ000000000
SAMN10261277
16
GCA_004219445.1ContigAAACOU000000000
SAMN10261400
262
GCA_004219295.1ContigAAACOK000000000
SAMN10261390
161
GCA_004219065.1ContigAAACOA000000000
SAMN10261297
40
GCA_004218745.1ContigAAACOH000000000
SAMN10261459
BG04
GCA_004218345.1ContigAAACMO000000000
SAMN10261287
27
GCA_004218125.1ContigAAACMF000000000
SAMN10261453
AV07
GCA_004217785.1ContigAAACLS000000000
SAMN10261462
BG07
SRA Data Details
ParameterValue
Data volume, Gbases115
Data volume, Mbytes65337

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