Bacteria (ID 474629) - BioProject

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Accession: PRJDB6962 ID: 474629

Bacteria

Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese wastewater treatment plant

The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam resistant Enterobacteriaceae) in Japanese wastewater treatment plant.

Accession	PRJDB6962
Publications (total 3) Less...	Sekizuka T et al., "Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan.", Environ Microbiol Rep, 2019 Aug;11(4):589-597 More... Sekizuka T et al., "Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan.", Environ Microbiol Rep, 2019 Aug;11(4):589-597 Sekizuka T et al., "Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay.", Infect Drug Resist, 2019;12:2243-2249 Sekizuka T et al., "Complete Genome Sequence of a bla(KPC-2)-Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan.", mSphere, 2018 Sep 19;3(5) Less...
Submission	Registration date: 4-Jun-2018 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	421
SRA Experiments	588
Protein Sequences	435618
Publications
PubMed	3
PMC	3
Other datasets
BioSample	583
Assembly	90

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

90
90

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_014169655.1	3	SAMD00194616	WP8-W18-ESBL-11	Acinetobacter baumannii
GCA_014159355.1	1	SAMD00194470	WP4-W18-ESBL-11	Acinetobacter baumannii
GCA_014168695.1	4	SAMD00194360	WP2-W18-ESBL-11	Acinetobacter pittii
GCA_014169935.1	3	SAMD00194714	BEC1-S18-ESBL-01	Acinetobacter sp. BEC1-S18-ESBL-01
GCA_003925855.2	4	SAMD00144878	GSH8M-1	Aeromonas caviae
GCA_014168635.1	2	SAMD00194350	WP2-W18-ESBL-01	Aeromonas caviae
GCA_014169675.1	4	SAMD00194620	WP8-S18-CRE-01	Aeromonas caviae
GCA_014169735.1	2	SAMD00194626	WP8-S18-ESBL-04	Aeromonas caviae
GCA_014169235.1	2	SAMD00194514	WP5-W18-ESBL-02	Aeromonas caviae
GCA_014162015.1	1	SAMD00194595	WP8-S17-ESBL-03	Aeromonas caviae
GCA_014158455.1	1	SAMD00194421	WP3-S18-ESBL-02	Aeromonas caviae
GCA_004296435.1	2	SAMD00144877	GSH8-2	Aeromonas hydrophila
GCA_014161955.1	1	SAMD00194576	WP7-S18-ESBL-06	Aeromonas hydrophila
GCA_014169715.1	2	SAMD00194624	WP8-S18-ESBL-02	Aeromonas hydrophila
GCA_014161425.1	1	SAMD00194563	WP7-W18-ESBL-02	Aeromonas media
GCA_014168615.1	10	SAMD00194348	WP2-W18-CRE-05	Aeromonas sp. WP2-W18-CRE-05
GCA_014168715.1	4	SAMD00194363	WP2-S18-CRE-03	Aeromonas veronii
GCA_014168995.1	6	SAMD00194437	WP3-W19-ESBL-03	Aeromonas veronii
GCA_014169795.1	4	SAMD00194633	WP8-S18-ESBL-11	Aeromonas veronii
GCA_014169875.1	5	SAMD00194675	WP9-W18-ESBL-04	Aeromonas veronii
GCA_014169835.1	6	SAMD00194639	WP8-W19-CRE-03	Aeromonas veronii
GCA_014169815.1	7	SAMD00194638	WP8-W19-CRE-02	Enterobacter cloacae
GCA_014169635.1	10	SAMD00194608	WP8-W18-CRE-04	Enterobacter cloacae
GCA_014169315.1	6	SAMD00194528	WP5-S18-ESBL-01	Enterobacter cloacae
GCA_014169295.1	7	SAMD00194526	WP5-S18-CRE-02	Enterobacter cloacae
GCA_009176965.1	7	SAMD00168435	GSH8M-2	Escherichia coli
GCA_014171015.1	7	SAMD00194481	WP4-S18-ESBL-07	Escherichia coli
GCA_014169275.1	6	SAMD00194523	WP5-W18-ESBL-11	Escherichia coli
GCA_014169475.1	6	SAMD00194555	WP7-S17-ESBL-04	Escherichia coli
GCA_014169455.1	4	SAMD00194553	WP7-S17-ESBL-01	Escherichia coli
GCA_014169435.1	2	SAMD00194535	WP5-S18-ESBL-09	Escherichia coli
GCA_014169415.1	10	SAMD00194534	WP5-S18-ESBL-08	Escherichia coli
GCA_014169395.1	2	SAMD00194533	WP5-S18-ESBL-07	Escherichia coli
GCA_014169115.1	8	SAMD00194468	WP4-W18-ESBL-09	Escherichia coli
GCA_014169095.1	5	SAMD00194467	WP4-W18-ESBL-08	Escherichia coli
GCA_014169195.1	2	SAMD00194506	WP5-S17-ESBL-10	Escherichia coli
GCA_014169175.1	7	SAMD00194483	WP4-S18-ESBL-09	Escherichia coli
GCA_014169155.1	3	SAMD00194482	WP4-S18-ESBL-08	Escherichia coli
GCA_014169035.1	6	SAMD00194455	WP4-S17-ESBL-08	Escherichia coli
GCA_014169015.1	5	SAMD00194451	WP4-S17-ESBL-03	Escherichia coli
GCA_014169615.1	5	SAMD00194604	WP8-S17-ESBL-12	Escherichia coli
GCA_014169595.1	6	SAMD00194597	WP8-S17-ESBL-05	Escherichia coli
GCA_014169575.1	6	SAMD00194579	WP7-S18-ESBL-09	Escherichia coli
GCA_014169855.1	3	SAMD00194670	WP9-S17-ESBL-11	Escherichia coli
GCA_014169775.1	3	SAMD00194629	WP8-S18-ESBL-07	Escherichia coli
GCA_014169695.1	7	SAMD00194621	WP8-S18-CRE-02	Escherichia coli
GCA_014168675.1	2	SAMD00194357	WP2-W18-ESBL-08	Escherichia coli
GCA_014168975.1	2	SAMD00194428	WP3-S18-ESBL-09	Escherichia coli
GCA_014168955.1	4	SAMD00194427	WP3-S18-ESBL-08	Escherichia coli
GCA_014168935.1	2	SAMD00194426	WP3-S18-ESBL-07	Escherichia coli
GCA_014168855.1	2	SAMD00194414	WP3-W18-ESBL-08	Escherichia coli
GCA_014168835.1	5	SAMD00194413	WP3-W18-ESBL-07	Escherichia coli
GCA_014168775.1	6	SAMD00194405	WP3-W18-CRE-03	Escherichia coli
GCA_014168755.1	4	SAMD00194372	WP2-S18-ESBL-08	Escherichia coli
GCA_014168735.1	2	SAMD00194371	WP2-S18-ESBL-07	Escherichia coli
GCA_014168595.1	3	SAMD00194346	WP2-W18-CRE-03	Escherichia coli
GCA_014169915.1	4	SAMD00194706	BEC1-S17-ESBL-09	Escherichia coli
GCA_014169895.1	3	SAMD00194704	BEC1-S17-ESBL-07	Escherichia coli
GCA_014157395.1	1	SAMD00194359	WP2-W18-ESBL-10	Escherichia coli
GCA_014162235.1	1	SAMD00194600	WP8-S17-ESBL-08	Escherichia coli
GCA_014160155.1	1	SAMD00194507	WP5-S17-ESBL-11	Escherichia coli
GCA_014169215.1	2	SAMD00194509	WP5-W18-CRE-01	Klebsiella aerogenes
GCA_003584585.1	5	SAMD00116246	GSU10-3	Klebsiella pneumoniae
GCA_014169375.1	2	SAMD00194532	WP5-S18-ESBL-06	Klebsiella pneumoniae
GCA_014168575.1	5	SAMD00194339	WP2-S17-ESBL-02	Klebsiella pneumoniae
GCA_014169335.1	3	SAMD00194529	WP5-S18-ESBL-02	Klebsiella pneumoniae
GCA_014168655.1	4	SAMD00194355	WP2-W18-ESBL-06	Klebsiella pneumoniae
GCA_014170935.1	6	SAMD00194474	WP4-S18-CRE-04	Klebsiella pneumoniae
GCA_014170655.1	11	SAMD00194404	WP3-W18-CRE-02	Klebsiella quasipneumoniae
GCA_014168895.1	6	SAMD00194422	WP3-S18-ESBL-03	Klebsiella quasipneumoniae
GCA_014168875.1	8	SAMD00194418	WP3-S18-CRE-02	Klebsiella quasipneumoniae
GCA_014169355.1	15	SAMD00194531	WP5-S18-ESBL-05	Klebsiella quasipneumoniae
GCA_014169255.1	8	SAMD00194518	WP5-W18-ESBL-06	Klebsiella quasipneumoniae
GCA_014169135.1	2	SAMD00194480	WP4-S18-ESBL-06	Klebsiella quasipneumoniae
GCA_014169495.1	5	SAMD00194558	WP7-S17-ESBL-08	Klebsiella quasipneumoniae
GCA_014168915.1	10	SAMD00194424	WP3-S18-ESBL-05	Klebsiella sp. WP3-S18-ESBL-05
GCA_014168815.1	11	SAMD00194408	WP3-W18-ESBL-02	Klebsiella sp. WP3-W18-ESBL-02
GCA_014169075.1	7	SAMD00194464	WP4-W18-ESBL-05	Klebsiella sp. WP4-W18-ESBL-05
GCA_014169515.1	6	SAMD00194568	WP7-S18-CRE-02	Klebsiella sp. WP7-S18-CRE-02
GCA_014169535.1	6	SAMD00194569	WP7-S18-CRE-03	Klebsiella sp. WP7-S18-CRE-03
GCA_014169555.1	5	SAMD00194574	WP7-S18-ESBL-04	Klebsiella sp. WP7-S18-ESBL-04
GCA_014169755.1	5	SAMD00194628	WP8-S18-ESBL-06	Klebsiella sp. WP8-S18-ESBL-06
GCA_014161995.1	1	SAMD00194592	WP8-S17-CRE-03	Metapseudomonas otitidis
GCA_014162535.1	1	SAMD00194605	WP8-W18-CRE-01	Pseudomonas putida
GCA_014169055.1	2	SAMD00194460	WP4-W18-CRE-03	Pseudomonas putida
GCA_027945845.1	6	SAMD00168436	GSH0205-8M-1	Raoultella ornithinolytica
GCA_014171135.1	5	SAMD00194637	WP8-W19-CRE-01	Raoultella ornithinolytica
GCA_014170855.1	14	SAMD00194412	WP3-W18-ESBL-06	Raoultella ornithinolytica
GCA_014168795.1	3	SAMD00194407	WP3-W18-ESBL-01	Raoultella ornithinolytica
GCA_014156975.1	1	SAMD00194327	WP1-W18-CRE-01	Stenotrophomonas maltophilia

SRA Data Details

Parameter	Value
Data volume, Gbases	535
Data volume, Tbytes	0.21

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Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese wastewater treatment plant

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