Shigella (ID 273284) - BioProject

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Accession: PRJNA273284 ID: 273284

Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.

Accession	PRJNA273284
Data Type	Genome sequencing and assembly
Scope	Multispecies
Keyword	GMI
Organism	Shigella[Taxonomy ID: 620] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Publications	Gangiredla J et al., "Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.", Microbiol Resour Announc, 2018 Nov;7(21)
Submission	Registration date: 3-Mar-2018 FDA Center for Food Safety and Applied Nutrition
Related Resources	CFSAN WGS program
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	63988
WGS master	148
Genomic DNA	9
SRA Experiments	133
Protein Sequences	455324
Publications
PubMed	1
PMC	1
Other datasets
BioSample	161
Assembly	149

Assembly details:

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Assembly level

Number of Assemblies

1
21
127
149

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_014039635.1	AAVFBH000000000		SAMN04316449	CFSAN003845	Shigella boydii
GCA_014039695.1	AAVFBC000000000		SAMN04316453	CFSAN010953	Shigella boydii
GCA_014039075.1	AAVFBJ000000000		SAMN04316448	CFSAN003703	Shigella boydii
GCA_014039295.1	AAVFAP000000000		SAMN04316455	ATCC 8704	Shigella boydii
GCA_002967135.1	PUGN00000000		SAMN08542241	BS986	Shigella boydii
GCA_002967205.1	PUGO00000000		SAMN08542240	BS984	Shigella boydii
GCA_003573425.1	QWTG00000000		SAMN03291496	DMB SH20138	Shigella boydii
GCA_003572225.1	QWTI00000000		SAMN03291494	DMB SH20140	Shigella boydii
GCA_003572235.1	QWTH00000000		SAMN03291497	DMB SH20139	Shigella boydii
GCA_003572455.1	QWSV00000000		SAMN07974670	DMB SH20032	Shigella boydii
GCA_003572405.1	QWSF00000000		SAMN07974663	DMB SH131	Shigella boydii
GCA_003572385.1	QWSD00000000		SAMN07974662	DMB SH129	Shigella boydii
GCA_003572325.1	QXHH00000000		SAMN03291464	ATCC 12030	Shigella boydii
GCA_003572355.1	QWSH00000000		SAMN03291469	ATCC 9905	Shigella boydii
GCA_003572335.1	QWSG00000000		SAMN07974664	DMB SH132	Shigella boydii
GCA_003572305.1	QWSI00000000		SAMN07974665	DMB SH136	Shigella boydii
GCA_003573285.1	QWTX00000000		SAMN07974683	DMB SH20248	Shigella boydii
GCA_003572575.1	QWRU00000000		SAMN07974660	DMB SH112	Shigella boydii
GCA_003572565.1	QWRX00000000		SAMN03291506	DMB SH121	Shigella boydii
GCA_003572525.1	QWSJ00000000		SAMN03291466	ATCC 35964	Shigella boydii
GCA_003572535.1	QWSE00000000		SAMN03291467	ATCC 8700	Shigella boydii
GCA_003572485.1	QWSK00000000		SAMN03291468	ATCC 9207	Shigella boydii
GCA_003572825.1	QWTW00000000		SAMN07974682	DMB SH20247	Shigella boydii
GCA_014039665.1	AAVFBD000000000		SAMN04323387	CFSAN024429	Shigella dysenteriae
GCA_014039655.1	AAVFBG000000000		SAMN04316452	ATCC 49551	Shigella dysenteriae
GCA_014039555.1	AAVFBB000000000		SAMN04323389	CFSAN024431	Shigella dysenteriae
GCA_014039615.1	AAVFBE000000000		SAMN04316451	CFSAN010951	Shigella dysenteriae
GCA_014039595.1	AAVFBA000000000		SAMN04323388	CFSAN024430	Shigella dysenteriae
GCA_003573295.1	QWTU00000000		SAMN03291477	DMB SH20207	Shigella dysenteriae
GCA_003572895.1	QWTO00000000		SAMN03291491	DMB SH20169	Shigella dysenteriae
GCA_003572735.1	QWRW00000000		SAMN03291505	DMB SH120	Shigella dysenteriae
GCA_003573065.1	QWTT00000000		SAMN03291476	DMB SH20191	Shigella dysenteriae
GCA_003572995.1	QWSS00000000		SAMN03291462	DMB SH20028	Shigella dysenteriae
GCA_003572625.1	QWSC00000000		SAMN07974661	DMB SH128	Shigella dysenteriae
GCA_003572835.1	QWTS00000000		SAMN03291465	ATCC 29026	Shigella dysenteriae
GCA_003572415.1	QWSB00000000		SAMN03291511	DMB SH127	Shigella dysenteriae
GCA_003572175.1	QXHX00000000		SAMN03291504	DMB SH116	Shigella dysenteriae
GCA_003572115.1	QXID00000000		SAMN07974680	DMB SH20196	Shigella dysenteriae
GCA_003572095.1	QXIF00000000		SAMN03291473	DMB SH20200	Shigella dysenteriae
GCA_003572055.1	QXIG00000000		SAMN03291471	DMB SH20201	Shigella dysenteriae
GCA_003572045.1	QXIH00000000		SAMN03291478	DMB SH20208	Shigella dysenteriae
GCA_003572015.1	QXIE00000000		SAMN07974681	DMB SH20198	Shigella dysenteriae
GCA_003572005.1	QXIC00000000		SAMN03291498	DMB SH20168	Shigella dysenteriae
GCA_003571975.1	QXHW00000000		SAMN03291502	DMB SH109	Shigella dysenteriae
GCA_002967495.1	PUGM00000000		SAMN08542242	BS987	Shigella dysenteriae
GCA_002967595.1	PUGV00000000		SAMN08542232	BS975	Shigella dysenteriae
GCA_002967245.1	PUGP00000000		SAMN08542239	BS983	Shigella dysenteriae
GCA_002967235.1	PUGT00000000		SAMN08542235	BS979	Shigella dysenteriae
GCA_002967275.1	PUGU00000000		SAMN08542234	BS978	Shigella dysenteriae
GCA_013967745.1	AAUZZS000000000		SAMN08624519	96G082	Shigella flexneri
GCA_013968385.1	AAVAAC000000000		SAMN08624451	96G169	Shigella flexneri
GCA_013968365.1	AAUZZZ000000000		SAMN08624453	96G058	Shigella flexneri
GCA_013967925.1	AAUZZU000000000		SAMN08624486	G184	Shigella flexneri
GCA_013967995.1	AAUZZW000000000		SAMN08624485	96G084	Shigella flexneri
GCA_013968065.1	AAUZZY000000000		SAMN08624454	96G142	Shigella flexneri
GCA_013968045.1	AAUZZX000000000		SAMN08624458	96G127	Shigella flexneri
GCA_013968025.1	AAUZZV000000000		SAMN08624484	96G083	Shigella flexneri
GCA_013968145.1	AAVAAE000000000		SAMN08624449	G045	Shigella flexneri
GCA_013968125.1	AAVAAB000000000		SAMN08624450	G057	Shigella flexneri
GCA_013968105.1	AAVAAD000000000		SAMN08624448	G106	Shigella flexneri
GCA_013968085.1	AAVAAA000000000		SAMN08624452	96G123	Shigella flexneri
GCA_013968225.1	AAVAAF000000000		SAMN08624101	96G126	Shigella flexneri
GCA_013968165.1	AAVAAG000000000		SAMN08624100	96G132	Shigella flexneri
GCA_002967315.1	PUGZ00000000		SAMN08542227	BS968	Shigella flexneri
GCA_002967295.1	PUGY00000000		SAMN08542228	BS970	Shigella flexneri
GCA_002967285.1	PUGW00000000		SAMN08542230	BS972	Shigella flexneri
GCA_002967545.1	PUGX00000000		SAMN08542229	BS971	Shigella flexneri
GCA_002967575.1	PUHF00000000		SAMN08542221	BS951	Shigella flexneri
GCA_002967535.1	PUGS00000000		SAMN08542236	BS980	Shigella flexneri
GCA_002967195.1	PUGR00000000		SAMN08542237	BS981	Shigella flexneri
GCA_002967145.1	PUGL00000000		SAMN08542243	BS988	Shigella flexneri
GCA_002967095.1	PUGK00000000		SAMN08542244	BS989	Shigella flexneri
GCA_002967445.1	PUHH00000000		SAMN08542219	BS938	Shigella flexneri
GCA_002967455.1	PUGJ00000000		SAMN08580446	BS973	Shigella flexneri
GCA_002967435.1	PUHE00000000		SAMN08542222	BS952	Shigella flexneri
GCA_002967405.1	PUHD00000000		SAMN08542223	BS956	Shigella flexneri
GCA_002967395.1	PUHC00000000		SAMN08542224	BS962	Shigella flexneri
GCA_002967375.1	PUHB00000000		SAMN08542225	BS966	Shigella flexneri
GCA_002967355.1	PUHA00000000		SAMN08542226	BS967	Shigella flexneri
GCA_002967625.1	PUHG00000000		SAMN08542220	BS942	Shigella flexneri
GCA_002967615.1	PUHI00000000		SAMN08542218	BS937	Shigella flexneri
GCA_002967655.1	PUHK00000000		SAMN08542215	SH199	Shigella flexneri
GCA_002967635.1	PUHJ00000000		SAMN08542216	SH200	Shigella flexneri
GCA_003123665.1	QDEA00000000		SAMN08542231	BS974	Shigella flexneri
GCA_003571965.1	QXIA00000000		SAMN07974677	DMB SH20109	Shigella flexneri
GCA_003572085.1	QXHZ00000000		SAMN07974676	DMB SH20108	Shigella flexneri
GCA_003572155.1	QXHY00000000		SAMN07974675	DMB SH20107	Shigella flexneri
GCA_003572145.1	QXIB00000000		SAMN03291495	DMB SH20134	Shigella flexneri
GCA_003572245.1	QWSQ00000000		SAMN07974668	DMB SH20025	Shigella flexneri
GCA_003572645.1	QWRR00000000		SAMN03291500	DMB SH107	Shigella flexneri
GCA_003572285.1	QWSP00000000		SAMN03291479	DMB SH20024	Shigella flexneri
GCA_003572985.1	QWTB00000000		SAMN03291470	DMB SH20092	Shigella flexneri
GCA_003573035.1	QWSN00000000		SAMN03291482	DMB SH20018	Shigella flexneri
GCA_003573155.1	QWTF00000000		SAMN07974674	DMB SH20103	Shigella flexneri
GCA_003573265.1	QWSR00000000		SAMN03291483	DMB SH20026	Shigella flexneri
GCA_003573225.1	QWST00000000		SAMN03291463	DMB SH20030	Shigella flexneri
GCA_003573235.1	QWSL00000000		SAMN07974666	DMB SH20012	Shigella flexneri
GCA_003573195.1	QWTE00000000		SAMN03291474	DMB SH20102	Shigella flexneri
GCA_003573335.1	QWTC00000000		SAMN03291472	DMB SH20100	Shigella flexneri
GCA_003573315.1	QWTP00000000		SAMN07974678	DMB SH20170	Shigella flexneri
GCA_003572745.1	QWRS00000000		SAMN03291501	DMB SH108	Shigella flexneri
GCA_003572685.1	QWSA00000000		SAMN03291510	DMB SH125	Shigella flexneri
GCA_003572695.1	QWRZ00000000		SAMN03291508	DMB SH123	Shigella flexneri
GCA_003572495.1	QWSM00000000		SAMN03291484	DMB SH20017	Shigella flexneri
GCA_003572955.1	QWTD00000000		SAMN07974673	DMB SH20101	Shigella flexneri
GCA_003572845.1	QWTR00000000		SAMN07974679	DMB SH20173	Shigella flexneri
GCA_002967515.2	PUGQ00000000		SAMN08542238	BS982	Shigella flexneri
GCA_033940825.1	ABPDJZ000000000		SAMN38372203	ESP23-9201	Shigella sonnei
GCA_013985735.1	AAVBEN000000000		SAMN07571653	PSU_0209	Shigella sonnei
GCA_013985745.1	AAVBEL000000000		SAMN07571568	PSU_0214	Shigella sonnei
GCA_013986655.1	AAVBEK000000000		SAMN07571571	PSU_0211	Shigella sonnei
GCA_013986635.1	AAVBEJ000000000		SAMN07571566	PSU_0212	Shigella sonnei
GCA_013986615.1	AAVBEI000000000		SAMN07571572	PSU_0210	Shigella sonnei
GCA_013985675.1	AAVBEO000000000		SAMN07571573	PSU_0215	Shigella sonnei
GCA_013985655.1	AAVBEM000000000		SAMN07571567	PSU_0213	Shigella sonnei
GCA_013988475.1	AAVBID000000000		SAMN07571594	PSU_0216	Shigella sonnei
GCA_013988575.1	AAVBIE000000000		SAMN07571562	PSU_0218	Shigella sonnei
GCA_013988555.1	AAVBIF000000000		SAMN07571563	PSU_0219	Shigella sonnei
GCA_013988535.1	AAVBIG000000000		SAMN07571565	PSU_0217	Shigella sonnei
GCA_013980515.1	AAVAUU000000000		SAMN07571633	PSU_0202	Shigella sonnei
GCA_013980775.1	AAVAUV000000000		SAMN07571612	PSU_0204	Shigella sonnei
GCA_013980915.1	AAVAVE000000000		SAMN07571651	PSU_0208	Shigella sonnei
GCA_013980975.1	AAVAVG000000000		SAMN07571618	PSU_0205	Shigella sonnei
GCA_013980955.1	AAVAVF000000000		SAMN07571584	PSU_0197	Shigella sonnei
GCA_013980935.1	AAVAVD000000000		SAMN07571616	PSU_0206	Shigella sonnei
GCA_013980895.1	AAVAUX000000000		SAMN07571614	PSU_0203	Shigella sonnei
GCA_013981715.1	AAVAUY000000000		SAMN07571634	PSU_0200	Shigella sonnei
GCA_013981835.1	AAVAUZ000000000		SAMN07571598	PSU_0198	Shigella sonnei
GCA_013981775.1	AAVAVA000000000		SAMN07571636	PSU_0201	Shigella sonnei
GCA_013981735.1	AAVAVB000000000		SAMN07571602	PSU_0199	Shigella sonnei
GCA_013981795.1	AAVAVC000000000		SAMN07571648	PSU_0207	Shigella sonnei
GCA_003572805.1	QWTV00000000		SAMN03291485	DMB SH20230	Shigella sonnei
GCA_003572725.1	QWRY00000000		SAMN03291507	DMB SH122	Shigella sonnei
GCA_003572905.1	QWTL00000000		SAMN03291487	DMB SH20160	Shigella sonnei
GCA_003572885.1	QWTQ00000000		SAMN03291492	DMB SH20171	Shigella sonnei
GCA_003572635.1	QWTK00000000		SAMN03291490	DMB SH20158	Shigella sonnei
GCA_003573185.1	QWSU00000000		SAMN07974669	DMB SH20031	Shigella sonnei
GCA_003573145.1	QWTJ00000000		SAMN03291493	DMB SH20142	Shigella sonnei
GCA_003573115.1	QWTN00000000		SAMN03291489	DMB SH20165	Shigella sonnei
GCA_003573105.1	QWTM00000000		SAMN03291488	DMB SH20163	Shigella sonnei
GCA_003573075.1	QWSO00000000		SAMN07974667	DMB SH20023	Shigella sonnei
GCA_003573025.1	QWSX00000000		SAMN07974671	DMB SH20034	Shigella sonnei
GCA_003572945.1	QWTA00000000		SAMN03291481	DMB SH20090	Shigella sonnei
GCA_003572605.1	QWRV00000000		SAMN03291503	DMB SH114	Shigella sonnei
GCA_003572445.1	QWRT00000000		SAMN07974659	DMB SH111	Shigella sonnei
GCA_003573375.1	QWSW00000000		SAMN03291486	DMB SH20033	Shigella sonnei
GCA_003573365.1	QWSZ00000000		SAMN03291512	DMB SH20046	Shigella sonnei
GCA_003573385.1	QWSY00000000		SAMN07974672	DMB SH20036	Shigella sonnei
GCA_002442535.1		9	SAMN03612247	CFSAN030807	Shigella sonnei

SRA Data Details

Parameter	Value
Data volume, Gbases	55
Data volume, Mbytes	35057

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Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

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