ID 336518 - BioProject

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Accession: PRJNA336518 ID: 336518

Live Microbial Ingredients Survey

See Genome Information for Lactobacillus acidophilus

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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94 additional projects are related by organism.

216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..

Creation of a genome sequence database of live microorganisms found in dietary supplements and cultured foods to be used for strain verification and characterization.

Accession	PRJNA336518
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 4) Less...	Barnaba TJ et al., "Draft Genome Sequences of 18 Streptococcus Strains Isolated from Live Dietary Supplements and Cultured Food Products.", Microbiol Resour Announc, 2022 Jun 16;11(6):e0026622 More... Barnaba TJ et al., "Draft Genome Sequences of 18 Streptococcus Strains Isolated from Live Dietary Supplements and Cultured Food Products.", Microbiol Resour Announc, 2022 Jun 16;11(6):e0026622 Barnaba TJ et al., "Draft Genome Sequences of Nine Bacillus Strains and Two Weizmannia Strains Isolated from Live Dietary Supplements and a Cultured Food Product.", Microbiol Resour Announc, 2022 Jan 20;11(1):e0090821 Barnaba TJ et al., "Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products.", Genome Announc, 2018 Jun 28;6(26) Gangiredla J et al., "Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.", Genome Announc, 2018 Jun 28;6(26) Less...
Submission	Registration date: 4-Aug-2016 USFDA

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6913
WGS master	108
SRA Experiments	764
Protein Sequences	176364
Publications
PubMed	4
PMC	4
Other datasets
BioSample	797
Assembly	108

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

1
107
108

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_018619295.1	JAHHEB000000000	SAMN15078727	DS43_4	Bacillus inaquosorum
GCA_018619255.1	JAHHEC000000000	SAMN15078705	DS36_4	Bacillus inaquosorum
GCA_018603775.1	JAHFZR000000000	SAMN15078713	DS39_4	Bacillus inaquosorum
GCA_018619315.1	JAHHED000000000	SAMN06464102	DS19_4	Bacillus spizizenii
GCA_018603805.1	JAHFZX000000000	SAMN06464101	DS1_4	Bacillus subtilis
GCA_018603725.1	JAHFZW000000000	SAMN06464103	DS3_4	Bacillus subtilis
GCA_018603715.1	JAHFZV000000000	SAMN06464104	DS6_4	Bacillus subtilis
GCA_018603605.1	JAHFZQ000000000	SAMN15078726	DS42_4	Bacillus subtilis
GCA_018603645.1	JAHFZT000000000	SAMN15078641	CF4_25	Bacillus thuringiensis
GCA_003095115.1	QDIU00000000	SAMN06464091	DS1_2	Bifidobacterium animalis
GCA_003095075.1	QDIP00000000	SAMN06464094	DS2_2	Bifidobacterium animalis
GCA_003095055.1	QDIZ00000000	SAMN06464095	DS20_2	Bifidobacterium animalis
GCA_003095015.1	QDIK00000000	SAMN08949000	DS28_2	Bifidobacterium animalis subsp. lactis
GCA_003094915.1	QDIV00000000	SAMN08948996	CF3_2	Bifidobacterium animalis subsp. lactis
GCA_003094895.1	QDIT00000000	SAMN06464092	DS11_2	Bifidobacterium animalis
GCA_003094875.1	QDIR00000000	SAMN06464093	DS15_2	Bifidobacterium animalis
GCA_003094775.1	QDIL00000000	SAMN08948999	DS27_2	Bifidobacterium animalis subsp. lactis
GCA_003094835.1	QDIO00000000	SAMN08948997	DS23_2	Bifidobacterium animalis subsp. lactis
GCA_003094815.1	QDIN00000000	SAMN08948998	DS24_2	Bifidobacterium animalis subsp. lactis
GCA_003094795.1	QDJA00000000	SAMN08949001	DS25_23	Bifidobacterium bifidum
GCA_003094755.1	QDIJ00000000	SAMN08949003	DS30_23	Bifidobacterium bifidum
GCA_003094735.1	QDII00000000	SAMN08949004	DS31_23	Bifidobacterium bifidum
GCA_003094715.1	QDIX00000000	SAMN08949005	DS32_23	Bifidobacterium bifidum
GCA_003094645.1	QDIH00000000	SAMN08949006	DS33_23	Bifidobacterium bifidum
GCA_003095035.1	QDIM00000000	SAMN08949002	DS26_23	Bifidobacterium bifidum
GCA_003095095.1	QDIS00000000	SAMN06464121	DS15_17	Bifidobacterium breve
GCA_003094855.1	QDIQ00000000	SAMN06464097	DS15_3	Bifidobacterium longum
GCA_003094995.1	QDIY00000000	SAMN08949007	DS32_3	Bifidobacterium longum subsp. longum
GCA_003094975.1	QDIG00000000	SAMN06464099	DS7_3	Bifidobacterium longum
GCA_003094955.1	QDIW00000000	SAMN06464096	DS1_3	Bifidobacterium longum
GCA_003094935.1	QDJB00000000	SAMN06464098	DS18_3	Bifidobacterium longum
GCA_003094635.1	QDIF00000000	SAMN06464100	DS9_3	Bifidobacterium longum
GCA_018603675.1	JAHFZS000000000	SAMN15078709	DS39_15	Heyndrickxia coagulans
GCA_018603695.1	JAHFZU000000000	SAMN06464119	DS16_15	Heyndrickxia coagulans
GCA_003052865.1	QAZD00000000	SAMN05942027	DS1_13	Lacticaseibacillus casei
GCA_003052855.1	QAZE00000000	SAMN05942028	DS13_13	Lacticaseibacillus casei
GCA_003052985.1	QAZJ00000000	SAMN05864073	DS3_11	Lacticaseibacillus rhamnosus
GCA_003052965.1	QAZI00000000	SAMN05864074	DS4_11	Lacticaseibacillus rhamnosus
GCA_003052945.1	QAZK00000000	SAMN05864079	DS13_11	Lacticaseibacillus rhamnosus
GCA_003052925.1	QAZH00000000	SAMN06464111	DS18_11	Lacticaseibacillus rhamnosus
GCA_003061665.1	QAHB00000000	SAMN05864076	DS12_11	Lacticaseibacillus rhamnosus
GCA_003061605.1	QAGX00000000	SAMN06464112	DS22_11	Lacticaseibacillus rhamnosus
GCA_003061645.1	QAGZ00000000	SAMN05864078	DS15_11	Lacticaseibacillus rhamnosus
GCA_003061625.1	QAGY00000000	SAMN05864075	DS9_11	Lacticaseibacillus rhamnosus
GCA_003061705.1	QAHA00000000	SAMN05864077	DS14_11	Lacticaseibacillus rhamnosus
GCA_003061565.1	QAGW00000000	SAMN06464110	DS17_11	Lacticaseibacillus rhamnosus
GCA_003061785.1	QAHE00000000	SAMN05726899	DS9_9	Lactiplantibacillus plantarum
GCA_003061805.1	QAHH00000000	SAMN05726893	DS11_9	Lactiplantibacillus plantarum
GCA_003061765.1	QAHG00000000	SAMN05726895	DS14_9	Lactiplantibacillus plantarum
GCA_003061725.1	QAHF00000000	SAMN05726897	DS6_9	Lactiplantibacillus plantarum
GCA_003053045.1	QAZP00000000	SAMN06464107	DS23_9	Lactiplantibacillus plantarum
GCA_003053025.1	QAZQ00000000	SAMN05726898	DS8_9	Lactiplantibacillus plantarum
GCA_003053035.1	QAZO00000000	SAMN06464105	DS18_9	Lactiplantibacillus plantarum
GCA_003053185.1	QAZS00000000	SAMN05726894	DS13_9	Lactiplantibacillus plantarum
GCA_003053165.1	QAZR00000000	SAMN05726896	DS3_9	Lactiplantibacillus plantarum
GCA_003053245.1	QAZY00000000	SAMN05583778	DS10_1A	Lactobacillus acidophilus
GCA_003053135.1	QAZX00000000	SAMN06464090	DS24_1	Lactobacillus acidophilus
GCA_003062045.1	QAHT00000000	SAMN05583775	DS1_1A	Lactobacillus acidophilus
GCA_003062025.1	QAHS00000000	SAMN05583779	DS11_1A	Lactobacillus acidophilus
GCA_003062005.1	QAHQ00000000	SAMN05583785	DS2_1A	Lactobacillus acidophilus
GCA_003061965.1	QAHR00000000	SAMN05583782	DS13_1A	Lactobacillus acidophilus
GCA_003061985.1	QAHP00000000	SAMN05583788	DS5_1A	Lactobacillus acidophilus
GCA_003061945.1	QAHO00000000	SAMN05583791	DS8_1A	Lactobacillus acidophilus
GCA_003061925.1	QAHN00000000	SAMN05583792	DS9_1A	Lactobacillus acidophilus
GCA_003061905.1	QAHM00000000	SAMN05583783	DS13_1B	Lactobacillus acidophilus
GCA_003061885.1	QAHL00000000	SAMN06464087	DS20_1	Lactobacillus acidophilus
GCA_003061845.1	QAHJ00000000	SAMN05942015	DS12_8	Lactobacillus helveticus
GCA_003061825.1	QAHI00000000	SAMN05942017	DS21_8	Lactobacillus helveticus
GCA_003053085.1	QAZU00000000	SAMN05942018	DS3_8	Lactobacillus helveticus
GCA_003053205.1	QAZT00000000	SAMN05942016	DS18_8	Lactobacillus helveticus
GCA_003053265.1	QBAA00000000	SAMN05942006	DS13_6	Lactobacillus sp. DS13_6
GCA_003062105.1	QAHV00000000	SAMN05942007	DS15_6	Lactobacillus sp. DS15_6
GCA_003053225.1	QAZZ00000000	SAMN05942008	DS18_6	Lactobacillus sp. DS18_6
GCA_003062185.1	QAHZ00000000	SAMN05942005	DS1_6	Lactobacillus sp. DS1_6
GCA_003062065.1	QAHW00000000	SAMN05942010	DS22_6	Lactobacillus sp. DS22_6
GCA_003062085.1	QAHU00000000	SAMN05942009	DS2_6	Lactobacillus sp. DS2_6
GCA_003062145.1	QAHX00000000	SAMN05942011	DS3_6	Lactobacillus sp. DS3_6
GCA_003062125.1	QAHY00000000	SAMN05942012	DS9_6	Lactobacillus sp. DS9_6
GCA_003053125.1	QAZW00000000	SAMN05942004	DS1_5	Levilactobacillus brevis
GCA_003061545.1	QAGV00000000	SAMN05942023	DS11_12	Ligilactobacillus salivarius
GCA_003061585.1	QAGU00000000	SAMN05942025	DS2_12	Ligilactobacillus salivarius
GCA_003052845.1	QAZF00000000	SAMN05942026	DS3_12	Ligilactobacillus salivarius
GCA_003052875.1	QAZG00000000	SAMN05942024	DS13_12	Ligilactobacillus salivarius
GCA_003061865.1	QAHK00000000	SAMN05942013	DS13_7	Limosilactobacillus fermentum
GCA_003053105.1	QAZV00000000	SAMN05942014	DS19_7	Limosilactobacillus fermentum
GCA_003053005.1	QAZN00000000	SAMN05942019	DS12_10	Limosilactobacillus reuteri
GCA_003061685.1	QAHC00000000	SAMN05942021	DS14_10	Limosilactobacillus reuteri
GCA_003061745.1	QAHD00000000	SAMN05942020	DS13_10	Limosilactobacillus reuteri
GCA_003064585.1	QAZL00000000	SAMN06464108	DS22_10	Limosilactobacillus reuteri
GCA_003065345.1	QAZM00000000	SAMN05942022	DS17_10	Limosilactobacillus reuteri
GCA_020076165.1	JAIQWS000000000	SAMN15078925	DS85_40A	Streptococcus salivarius
GCA_020076235.1	JAIQWT000000000	SAMN15078926	DS85_40B	Streptococcus salivarius
GCA_020076365.1	JAIQXB000000000	SAMN15078775	DS51_14	Streptococcus thermophilus
GCA_020076175.1	JAIQWU000000000	SAMN15078601	CF12_14	Streptococcus thermophilus
GCA_020076145.1	JAIQWP000000000	SAMN15078736	DS45_14	Streptococcus thermophilus
GCA_020076105.1	JAIQWR000000000	SAMN15078890	DS76_14	Streptococcus thermophilus
GCA_020076115.1	JAIQWQ000000000	SAMN15078639	CF4_14	Streptococcus thermophilus
GCA_020076085.1	JAIQWN000000000	SAMN15078635	CF3_14	Streptococcus thermophilus
GCA_020076065.1	JAIQWO000000000	SAMN15078656	CF8_14	Streptococcus thermophilus
GCA_020076045.1	JAIQWM000000000	SAMN15078648	CF5_14	Streptococcus thermophilus
GCA_020076015.1	JAIQWJ000000000	SAMN15078605	CF13_14	Streptococcus thermophilus
GCA_020076005.1	JAIQWK000000000	SAMN15078662	DS03_14	Streptococcus thermophilus
GCA_020075985.1	JAIQWL000000000	SAMN15078596	CF10_14	Streptococcus thermophilus
GCA_020075965.1	JAIQWI000000000	SAMN15078830	DS61_14	Streptococcus thermophilus
GCA_020075945.1	JAIQWH000000000	SAMN15078680	DS30_14	Streptococcus thermophilus
GCA_020075925.1	JAIQWG000000000	SAMN06464115	DS14_14	Streptococcus thermophilus
GCA_020075875.1	JAIQWE000000000	SAMN06464116	CF1_14	Streptococcus thermophilus
GCA_020075895.1	JAIQWF000000000	SAMN06464117	CF2_14	Streptococcus thermophilus

SRA Data Details

Parameter	Value
Data volume, Gbases	741
Data volume, Tbytes	0.39

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