Bacteria (ID 282954) - BioProject

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Accession: PRJNA282954 ID: 282954

Bacteria

Human oral bacterial isolates Genome sequencing

Forsyth oral bacterial genomes isolated in pure culture from human oral samples

Accession	PRJNA282954
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 3) Less...	Bor B et al., "Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts.", J Dent Res, 2020 Jun;99(6):685-694 More... Bor B et al., "Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts.", J Dent Res, 2020 Jun;99(6):685-694 Ansbro K et al., "Tannerella serpentiformis sp. nov., isolated from the human mouth.", Int J Syst Evol Microbiol, 2020 Jun;70(6):3749-3754 Lamont EI et al., "Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum Saccharibacteria (TM7).", Microbiol Resour Announc, 2020 Aug 20;9(34) Less...
Grants	"A Foundation for The Oral Microbiome and Metagenome" (Grant ID DE016937, National Institute of Dental and Craniofacial Research)
Submission	Registration date: 6-Apr-2018 The Forsyth Institute
Related Resources	Human Oral Microbiome Project
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	191
WGS master	11
Genomic DNA	169
SRA Experiments	4
Protein Sequences	251234
Publications
PubMed	3
PMC	2
Other datasets
BioSample	134
Assembly	127
Supplementary data
Base modification	101

Assembly details:

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Assembly level

Number of Assemblies

106
10
11
127

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_030644185.1		1	SAMN35884266	F0489	Actinomyces massiliensis
GCA_001553935.1		1	SAMN04435864	T14V	Actinomyces oris
GCA_034648895.1	JAXBCZ000000000		SAMN35889518	ORNL 0101	Actinomyces oris
GCA_001553565.1		1	SAMN04435863	CCUG 36733	Actinomyces radicidentis
GCA_013394715.1		1	SAMN15358582	F0496	Actinomyces sp. oral taxon 169
GCA_005696555.1		1	SAMN11483330	F0337	Actinomyces sp. oral taxon 171 str. F0337
GCA_001278845.1		1	SAMN04009745	F0588	Actinomyces sp. oral taxon 414
GCA_002999235.1		2	SAMN08439033	F0631	Actinomyces sp. oral taxon 897
GCA_001262035.1		1	SAMN03704034	W10433	Aggregatibacter aphrophilus
GCA_041734645.1		1	SAMN42493830	W10649	Aggregatibacter sp. HMT-949
GCA_018128305.1		3	SAMN18352203	W11186	Aggregatibacter sp. oral taxon 513
GCA_001717545.1		1	SAMN05505093	W11661	Anaerolineaceae bacterium oral taxon 439
GCA_005696855.1		1	SAMN11483328	F0700	Arachnia propionica
GCA_018128365.1		1	SAMN18352198	F0714	Arachnia propionica
GCA_018128345.1		1	SAMN18352184	F0231	Arachnia propionica
GCA_018128325.1		1	SAMN18352173	DSMZ 100122	Arachnia rubra
GCA_001189535.1		1	SAMN03704031	F0371	Arsenicicoccus sp. oral taxon 190
GCA_018128285.1		1	SAMN18352207	W9116	Atopobium sp. oral taxon 416
GCA_002998535.1		1	SAMN08439035	F0111	Bacteroides heparinolyticus
GCA_002998435.1		1	SAMN08472433	ATCC 33285	Bacteroides zoogleoformans
GCA_005697565.1		1	SAMN11483331	BB001	Candidatus Nanosynbacter featherlites
GCA_005697215.1		1	SAMN11483318	AC001	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013394755.1		1	SAMN15358658	HB001	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013100825.1		1	SAMN11483320	CM006	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013100845.1		1	SAMN11483319	AC002	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013100805.1		1	SAMN11483321	FS03P	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013099195.1		1	SAMN11483322	CM001	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013099015.1		1	SAMN11483323	CM002	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013098855.1		1	SAMN11483324	CM003	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013098655.1		1	SAMN11483325	CM009	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_013098515.1		1	SAMN11483326	CM010	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_010202845.1		1	SAMN13876978	FS05P-B	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_010202645.1		1	SAMN13876979	FS07P	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_010202465.1		1	SAMN13876980	FS13P	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_010202115.1		1	SAMN13876982	FS15P	Candidatus Saccharibacteria bacterium oral taxon 488
GCA_005697055.1		1	SAMN11483327	PM004	Candidatus Saccharibacteria bacterium oral taxon 955
GCA_010202265.1		1	SAMN13876981	FS14P	Candidatus Saccharibacteria bacterium oral taxon 955
GCA_010201925.1		1	SAMN13876983	FS17P	Candidatus Saccharibacteria bacterium oral taxon 955
GCA_001553545.1		1	SAMN04435862	CCUG 32990	Capnocytophaga haemolytica
GCA_041734475.1		1	SAMN42495194	F0087	Capnocytophaga leadbetteri
GCA_001278825.1		1	SAMN04009744	F0383	Capnocytophaga sp. oral taxon 323
GCA_002998835.1		2	SAMN08439036	F0512	Capnocytophaga sp. oral taxon 864
GCA_002999135.1		2	SAMN08472925	F0545	Capnocytophaga sp. oral taxon 878
GCA_013394735.1		1	SAMN15360087	W10638	Capnocytophaga sp. oral taxon 902
GCA_013394785.1	JABXYW000000000		SAMN15360088	W10654	Capnocytophaga sp. oral taxon 903
GCA_018128265.1		2	SAMN18352201	ORNL-0100	Cellulosimicrobium cellulans
GCA_001717565.1		2	SAMN05413927	F0672	Cutibacterium modestum
GCA_001553625.1		1	SAMN04435861	DSM 12838	Desulfomicrobium orale DSM 12838
GCA_001553605.1		1	SAMN04435860	CCUG 45958	Desulfovibrio fairfieldensis
GCA_001717505.1		1	SAMN05413926	F0677	Dialister pneumosintes
GCA_002999155.1		3	SAMN08439030	W5195	Dietzia sp. oral taxon 368
GCA_002998295.1		1	SAMN08567288	CCUG 47711	Fastidiosipila sanguinis
GCA_002243405.1		1	SAMN03897723	W7671	Fusobacterium sp. oral taxon 203
GCA_001553915.1		1	SAMN04435857	W2231	Gemella sp. oral taxon 928
GCA_002998595.1		1	SAMN08439034	F0629	Haemophilus sp. oral taxon 036
GCA_001444445.1		1	SAMN04260158	F0113	Hoylesella enoeca
GCA_003043955.1	PYXF00000000		SAMN08743845	F0428	Lachnospiraceae bacterium oral taxon 096
GCA_018141845.1		1	SAMN18352199	F0428	Lachnospiraceae bacterium oral taxon 096
GCA_002999035.1		1	SAMN08439028	W11650	Lachnospiraceae bacterium oral taxon 500
GCA_030644325.1		1	SAMN35884267	HMT-225	Leptotrichia sp. HMT-225
GCA_001274535.1		1	SAMN03976113	W10393	Leptotrichia sp. oral taxon 212
GCA_018128225.1		1	SAMN18352197	F0707	Leptotrichia sp. oral taxon 218
GCA_018128245.1		2	SAMN18352196	F0705	Leptotrichia sp. oral taxon 221
GCA_013394795.1	JABXYU000000000		SAMN15358583	F0708	Leptotrichia sp. oral taxon 223
GCA_013394865.1	JABXYV000000000		SAMN15358621	F0703	Leptotrichia sp. oral taxon 417
GCA_002240055.1		1	SAMN05413925	F0590	Leptotrichia sp. oral taxon 498
GCA_001553645.1		1	SAMN04435855	F0260	Leptotrichia sp. oral taxon 847
GCA_002998925.1		1	SAMN08567286	CCUG 47132	Mogibacterium diversum
GCA_030644205.1		3	SAMN35884268	ATCC 700924	Mogibacterium neglectum
GCA_002243385.1		1	SAMN03897725	ATCC 700696	Mogibacterium pumilum
GCA_013394805.1	JABXYR000000000		SAMN15357426	W9173	Mogibacterium timidum
GCA_001553955.1		5	SAMN04435858	CCUG 350	Moraxella osloensis
GCA_001189515.2		1	SAMN03785053	F0089	Olsenella sp. oral taxon 807
GCA_013394775.1	JABXYT000000000		SAMN15358533	W9097	Oribacterium sp. oral taxon 102
GCA_001262075.1		1	SAMN03704033	W10237	Ottowia sp. oral taxon 894
GCA_003033945.1		1	SAMN08743844	W10507	Paenibacillus glucanolyticus
GCA_013394875.1	JABXYS000000000		SAMN15358171	W5028	Peptostreptococcaceae bacterium oral taxon 081
GCA_002998695.1		1	SAMN08439029	W2294	Peptostreptococcaceae bacterium oral taxon 929
GCA_018127745.1		1	SAMN18352206	W7780	Porphyromonas sp. oral taxon 275
GCA_018128205.1		3	SAMN18352182	F0115	Prevotella denticola
GCA_018128185.1		1	SAMN18352183	F0119	Prevotella denticola
GCA_018128165.1		2	SAMN18352185	F0288	Prevotella denticola
GCA_018141825.1		1	SAMN18352179	F0105	Prevotella denticola
GCA_001262015.1		2	SAMN03704035	W1435	Prevotella fusca JCM 17724
GCA_018128145.1		2	SAMN18352204	W1435	Prevotella fusca JCM 17724
GCA_018128125.1		2	SAMN18352190	F0411	Prevotella histicola
GCA_018128105.1		2	SAMN18352180	F0106	Prevotella jejuni
GCA_018128085.1		2	SAMN18352195	F0697	Prevotella jejuni
GCA_018128065.1		2	SAMN18352176	F0091	Prevotella melaninogenica
GCA_018128045.1		2	SAMN18352174	F0054	Prevotella melaninogenica
GCA_018128005.1		3	SAMN18352186	F0299	Prevotella melaninogenica
GCA_018127965.1		2	SAMN18352188	F0301	Prevotella melaninogenica
GCA_018127945.1		3	SAMN18352187	F0300	Prevotella melaninogenica
GCA_018127925.1		2	SAMN18352191	F0516	Prevotella melaninogenica
GCA_018127905.1		2	SAMN18352193	F0692	Prevotella melaninogenica
GCA_018127885.1		2	SAMN18352194	F0695	Prevotella melaninogenica
GCA_018127985.1		2	SAMN18352177	F0096	Prevotella multiformis
GCA_018127865.1		3	SAMN18352178	F0103	Prevotella nigrescens F0103
GCA_018127845.1		2	SAMN18352192	F0630	Prevotella nigrescens
GCA_018127825.1		3	SAMN18352181	F0109	Prevotella nigrescens
GCA_001683355.1		3	SAMN03897722	W2052	Prevotella scopos JCM 17725
GCA_018127785.1		3	SAMN18352205	W2052	Prevotella scopos JCM 17725
GCA_003043935.1	PYXE00000000	1	SAMN04435865	F0648	Prevotella sp. oral taxon 313
GCA_003043945.1	PYXG00000000		SAMN08743843	F0043	Prevotella sp. oral taxon 376
GCA_018127805.1		1	SAMN18352175	F0059	Prevotella sp. oral taxon 475
GCA_003043925.1	PYXD00000000		SAMN08439031	W6195	Prevotella sp. oral taxon 820
GCA_018127765.1		3	SAMN18352189	F0319	Prevotella veroralis
GCA_001262055.1		1	SAMN03704036	W712	Schaalia meyeri
GCA_030644365.1		1	SAMN35889120	F0311	Schaalia sp. HMT-172
GCA_030644345.1		1	SAMN35889121	F0543	Schaalia sp. HMT-877
GCA_030644225.1		1	SAMN35889122	ATCC 43527	Selenomonas dianae
GCA_001683335.1		1	SAMN03897727	W7667	Selenomonas sp. oral taxon 126
GCA_001554015.1		2	SAMN04435856	F0591	Selenomonas sp. oral taxon 136
GCA_001189555.1		1	SAMN03704032	F0592	Selenomonas sp. oral taxon 478
GCA_001717585.1		2	SAMN05420587	W5150	Selenomonas sp. oral taxon 920
GCA_030644245.1		1	SAMN35889141	F0718	Staphylococcus haemolyticus
GCA_030644385.1		1	SAMN35889517	F0698	Stomatobaculum sp. F0698
GCA_018127725.1		1	SAMN18352172	CCUG 66490	Streptococcus lactarius
GCA_013394695.1		1	SAMN15358107	F0704	Streptococcus sp. oral taxon 061
GCA_001683375.1		3	SAMN03897726	W10853	Streptococcus sp. oral taxon 064
GCA_001553685.1		1	SAMN04435859	F0610 (5-114)	Streptococcus sp. oral taxon 431
GCA_018127705.1		1	SAMN18352202	PM007	TM7 phylum sp. oral taxon 349
GCA_001717525.2		1	SAMN05413928	W11667	Tannerella serpentiformis
GCA_003033925.1		1	SAMN08743846	W11666	Tannerella serpentiformis
GCA_002998355.1		1	SAMN08567287	CCUG 44730	Victivallales bacterium CCUG 44730
GCA_003433295.1		2	SAMN03897724	ATCC 700079	Eubacterium minutum ATCC 700079
GCA_001189495.1		1	SAMN03704030	ATCC 35585	Eubacterium sulci ATCC 35585

SRA Data Details

Parameter	Value
Data volume, Gbases	6
Data volume, Mbytes	21865

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Human oral bacterial isolates Genome sequencing

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