ID 430813 - BioProject

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Accession: PRJNA430813 ID: 430813

NIH Clinical Center Carbapenem Resistant Bacteria: An Analysis of Hospital Plumbing

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This project is a component of the National Institutes of Health Clinical Center Carbapenem Resistant Bacteria: An Analysis of Hospital Plumbing

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26 additional projects are components of the National Institutes of Health Clinical Center Carbapenem Resistant Bacteria: An Analysis of Hospital Plumbing.

Carbapenem Resistant Enterobacteriaceae strains including Klebsiella, Escherichia, Enterobacter, Citrobacter and Pantoea species isolated from patients and hospital environment.

Accession	PRJNA430813
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Weingarten RA et al., "Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance.", mBio, 2018 Feb 6;9(1)
Submission	Registration date: 19-Jan-2018 NIH
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5436
WGS master	52
Genomic DNA	151
SRA Experiments	114
Protein Sequences	424000
Publications
PubMed	1
PMC	1
Other datasets
BioSample	83
Assembly	83
Supplementary data
Base modification	93

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

31
52
83

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_002902905.1		1	SAMN04287051	AONIH1	Achromobacter sp. AONIH1
GCA_002902885.1		5	SAMN06040401	ABNIH28	Acinetobacter baumannii
GCA_002919905.1	PQLQ00000000		SAMN04287066	ABNIH27	Acinetobacter sp. ABNIH27
GCA_002934695.1		8	SAMN03455971	ACNIH1	Acinetobacter sp. ACNIH1
GCA_002934965.1		8	SAMN04287023	ACNIH2	Acinetobacter sp. ACNIH2
GCA_002918965.1	PQLP00000000		SAMN06921697	ACNIH3	Acinetobacter sp. ACNIH3
GCA_002919885.1	PQLO00000000		SAMN06921698	ACNIH4	Acinetobacter sp. ACNIH4
GCA_002918915.1	PQLL00000000		SAMN04286972	AHNIH2	Aeromonas hydrophila
GCA_002934285.1		3	SAMN03455980	ASNIH1	Aeromonas sp. ASNIH1
GCA_002934795.1		6	SAMN03455981	ASNIH2	Aeromonas sp. ASNIH2
GCA_002903405.1		4	SAMN03455983	ASNIH3	Aeromonas sp. ASNIH3
GCA_002934425.1		5	SAMN03455984	ASNIH4	Aeromonas sp. ASNIH4
GCA_002902865.1		2	SAMN04286971	ASNIH5	Aeromonas sp. ASNIH5
GCA_002919845.1	PQLM00000000		SAMN04287022	ASNIH6	Aeromonas sp. ASNIH6
GCA_002903485.1		2	SAMN06040385	ASNIH7	Aeromonas sp. ASNIH7
GCA_002919855.1	PQLN00000000		SAMN06040402	ASNIH8	Aeromonas sp. ASNIH8
GCA_002920175.1	PQJV00000000		SAMN04287067	PSNIH6	Candidatus Pantoea alvi
GCA_002919825.1	PQLK00000000		SAMN06040405	CFNIH11	Citrobacter freundii complex sp. CFNIH11
GCA_002918875.1	PQLJ00000000		SAMN06040422	CFNIH12	Citrobacter freundii complex sp. CFNIH12
GCA_002903215.1		3	SAMN03455982	CFNIH3	Citrobacter freundii complex sp. CFNIH3
GCA_002934505.1		4	SAMN03455986	CFNIH4	Citrobacter freundii complex sp. CFNIH4
GCA_002919795.1	PQLH00000000		SAMN03455988	CFNIH5	Citrobacter freundii complex sp. CFNIH5
GCA_002918835.1	PQLG00000000		SAMN04286973	CFNIH6	Citrobacter freundii complex sp. CFNIH6
GCA_002918855.1	PQLF00000000		SAMN03455997	CFNIH7	Citrobacter freundii complex sp. CFNIH7
GCA_002918865.1	PQLI00000000		SAMN03455999	CFNIH8	Citrobacter freundii complex sp. CFNIH8
GCA_002903305.1		5	SAMN04287052	CFNIH9	Citrobacter freundii complex sp. CFNIH9
GCA_002934585.1		7	SAMN06040393	CFNIH10	Citrobacter sp. CFNIH10
GCA_002919745.1	PQLB00000000		SAMN06040376	ECNIH10	Enterobacter cloacae complex sp. ECNIH10
GCA_002919725.1	PQKX00000000		SAMN04287053	ECNIH11	Enterobacter cloacae complex sp. ECNIH11
GCA_002919685.1	PQKV00000000		SAMN06040404	ECNIH12	Enterobacter cloacae complex sp. ECNIH12
GCA_002919665.1	PQKU00000000		SAMN06040406	ECNIH13	Enterobacter cloacae complex sp. ECNIH13
GCA_002918755.1	PQKZ00000000		SAMN06040414	ECNIH14	Enterobacter cloacae complex sp. ECNIH14
GCA_002919765.1	PQLA00000000		SAMN06040416	ECNIH15	Enterobacter cloacae complex sp. ECNIH15
GCA_002919705.1	PQKW00000000		SAMN06040421	ECNIH16	Enterobacter cloacae complex sp. ECNIH16
GCA_002918795.1	PQLD00000000		SAMN06921699	ECNIH17	Enterobacter cloacae complex sp. ECNIH17
GCA_002918735.1	PQKY00000000		SAMN04287063	ECNIH8	Enterobacter cloacae complex sp. ECNIH8
GCA_002919775.1	PQLC00000000		SAMN06040375	ECNIH9	Enterobacter cloacae complex sp. ECNIH9
GCA_002903065.1		4	SAMN06040390	ENNIH1	Enterobacteriaceae bacterium ENNIH1
GCA_002903045.1		6	SAMN06040391	ENNIH2	Enterobacteriaceae bacterium ENNIH2
GCA_002903085.1		2	SAMN06040429	ENNIH3	Enterobacteriaceae bacterium ENNIH3
GCA_002903125.1		3	SAMN05341196	ECONIH6	Escherichia coli
GCA_002903105.1		8	SAMN06040386	ECONIH5	Escherichia coli
GCA_002919645.1	PQKS00000000		SAMN03455932	ECONIH3	Escherichia coli
GCA_002918765.1	PQKT00000000		SAMN06040430	ECONIH7	Escherichia coli
GCA_002934895.1		7	SAMN03455998	ECONIH4	Escherichia coli
GCA_002918705.1	PQKR00000000		SAMN06921700	ESNIH1	Escherichia sp. ESNIH1
GCA_002918815.1	PQLE00000000		SAMN03455994	EANIH1	Klebsiella aerogenes
GCA_002918665.1	PQKO00000000		SAMN06040439	KONIH10	Klebsiella michiganensis
GCA_002906435.1		3	SAMN06040382	KONIH5	Klebsiella oxytoca
GCA_002906415.1		8	SAMN03456001	KONIH2	Klebsiella oxytoca
GCA_002906395.1		6	SAMN04287054	KONIH4	Klebsiella oxytoca
GCA_002918635.1	PQKN00000000		SAMN06040420	KONIH8	Klebsiella oxytoca
GCA_002918695.1	PQKP00000000		SAMN06040383	KONIH6	Klebsiella oxytoca
GCA_002918655.1	PQKL00000000		SAMN04287025	KONIH3	Klebsiella oxytoca
GCA_002919625.1	PQKQ00000000		SAMN06040438	KONIH9	Klebsiella oxytoca
GCA_002919605.1	PQKM00000000		SAMN06040392	KONIH7	Klebsiella oxytoca
GCA_002918585.2		5	SAMN03455990	KPNIH45	Klebsiella pneumoniae
GCA_002919565.1	PQKJ00000000		SAMN04287031	KPNIH46	Klebsiella pneumoniae
GCA_002919575.1	PQKI00000000		SAMN04287033	KPNIH47	Klebsiella pneumoniae
GCA_002920135.1	PQJQ00000000		SAMN07949718	KPNIH26	Klebsiella pneumoniae
GCA_002920305.1	PQKF00000000		SAMN06040419	KPNIH51	Klebsiella pneumoniae
GCA_002920285.1	PQKH00000000		SAMN03455933	KPNIH42	Klebsiella pneumoniae
GCA_002918615.1	PQKK00000000		SAMN03455936	KPNIH43	Klebsiella pneumoniae
GCA_002935085.1		7	SAMN06040387	KPNIH48	Klebsiella pneumoniae
GCA_002903025.1		9	SAMN06040388	KPNIH49	Klebsiella pneumoniae
GCA_002903005.1		6	SAMN06040389	KPNIH50	Klebsiella pneumoniae
GCA_002902985.1		5	SAMN06040403	LSNIH1	Leclercia sp. LSNIH1
GCA_002920235.1	PQKC00000000		SAMN06040407	LSNIH2	Leclercia sp. LSNIH2
GCA_002935105.1		5	SAMN06040408	LSNIH3	Leclercia sp. LSNIH3
GCA_002920265.1	PQKE00000000		SAMN06040409	LSNIH4	Leclercia sp. LSNIH4
GCA_002919545.1	PQKB00000000		SAMN06040410	LSNIH5	Leclercia sp. LSNIH5
GCA_002919525.1	PQKA00000000		SAMN06040413	LSNIH6	Leclercia sp. LSNIH6
GCA_002919035.1	PQKD00000000		SAMN06040415	LSNIH7	Leclercia sp. LSNIH7
GCA_002920195.1	PQJY00000000		SAMN06040440	LSNIH8	Leclercia sp. LSNIH8
GCA_002922505.1	PQJW00000000		SAMN04287024	PSNIH3	Pantoea sp. PSNIH3
GCA_002919015.1	PQJZ00000000		SAMN04287027	PSNIH4	Pantoea sp. PSNIH4
GCA_002918995.1	PQJX00000000		SAMN04287037	PSNIH5	Pantoea sp. PSNIH5
GCA_002934345.1		1	SAMN03455985	PONIH3	Pseudomonas sp. PONIH3
GCA_002935055.1		3	SAMN04287055	SSNIH1	Serratia sp. SSNIH1
GCA_002920145.1	PQJR00000000		SAMN04287056	SSNIH2	Serratia sp. SSNIH2
GCA_002920115.1	PQJT00000000		SAMN06040394	SSNIH3	Serratia sp. SSNIH3
GCA_002918955.1	PQJU00000000		SAMN06040395	SSNIH4	Serratia sp. SSNIH4
GCA_002920095.1	PQJS00000000		SAMN06040418	SSNIH5	Serratia sp. SSNIH5

SRA Data Details

Parameter	Value
Data volume, Gbases	241
Data volume, Tbytes	0.40

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NIH Clinical Center Carbapenem Resistant Bacteria: An Analysis of Hospital Plumbing

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