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Accession: PRJNA10772 ID: 10772

Populus trichocarpa isolate:Nisqually-1 (black cottonwood)

Genome sequencing of Populus trichocarpa, first tree genome to be sequenced

See Genome Information for Populus trichocarpa
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6240 additional projects are related by organism.

Joint Genome Institute of US Department of Energy is sequencing the genome of Populus trichocarpa clone 'Nisqually-1' by whole-genome shotgun method. More...

AccessionPRJNA10772
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismPopulus trichocarpa[Taxonomy ID: 3694]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa
PublicationsTuskan GA et al., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).", Science, 2006 Sep 15;313(5793):1596-604
SubmissionRegistration date: 14-Sep-2006
US DOE Joint Genome Institute (JGI
- DOE Joint Genome Institute
Related Resources
Locus Tag PrefixPOPTR
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)126
WGS master1
Genomic DNA1
Protein Sequences52500
Publications
PubMed1
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000002775.4ChromosomeAARH00000000
19
SAMN02953657
Populus trichocarpa
Related RefSeq Project
PRJNA17973 : Fast growing tree being used as a model for molecular tree biology, first forest tree to be sequenced

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