Enterococcus faecium (ID 407447) - BioProject

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Accession: PRJNA407447 ID: 407447

Enterococcus faecium

Longitudinal Whole-Genome Analysis Identifies Variants Associated with Vancomycin, Linezolid and Daptomycin Resistance Changes in Enterococcus faecium in Response to Treatment

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Sequential Enterococcus faecium bacteremia isolates, collected at The Mount Sinai Hospital in New York, NY, were sequenced to identify genomic variants associated with emergence of vancomycin, linezolid and daptomycin resistance.

Accession	PRJNA407447
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Enterococcus faecium[Taxonomy ID: 1352] Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecium
Submission	Registration date: 28-Dec-2017 Icahn School of Medicine at Mount Sinai
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	33
Protein Sequences	20762
Other datasets
BioSample	7
Assembly	7

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

7
7

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_002848745.1	5	SAMN07679732	Efaecium_ER04526.3A	Enterococcus faecium
GCA_002848725.1	5	SAMN07679733	Efaecium_ER04526.5A	Enterococcus faecium
GCA_002848705.1	4	SAMN07679734	Efaecium_ER04619.3A	Enterococcus faecium
GCA_002848685.1	5	SAMN07679730	Efaecium_ER04462.3A	Enterococcus faecium
GCA_002848665.1	5	SAMN07679731	Efaecium_ER04484.3A	Enterococcus faecium
GCA_002848645.1	5	SAMN07679729	Efaecium_ER04120.3A	Enterococcus faecium
GCA_002848625.1	4	SAMN07679728	Efaecium_ER03933.3A	Enterococcus faecium

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LinkOut to external resources

2879820294: Enterococcus faecium Efaecium_ER04619.3A [Integrated Microbial Genomes]
2879820294: Enterococcus faecium Efaecium_ER04619.3A
Integrated Microbial Genomes
2907666982: Enterococcus faecium Efaecium_ER03933.3A [Integrated Microbial Genomes]
2907666982: Enterococcus faecium Efaecium_ER03933.3A
Integrated Microbial Genomes
2904366593: Enterococcus faecium Efaecium_ER04526.5A [Integrated Microbial Genomes]
2904366593: Enterococcus faecium Efaecium_ER04526.5A
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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Enterococcus faecium
Enterococcus faecium
Longitudinal Whole-Genome Analysis Identifies Variants Associated with Vancomycin, Linezolid and Daptomycin Resistance Changes in Enterococcus faecium in Response to Treatment

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