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Accession: PRJNA419519 ID: 419519

Listeria monocytogenes

Genome sequencing of Listeria monocytogenes ST9 isolates

See Genome Information for Listeria monocytogenes
Genome sequencing of Listeria monocytogenes MLST sequence type 9 (ST9) isolates from Norwegian food industry
AccessionPRJNA419519
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismListeria monocytogenes[Taxonomy ID: 1639]
Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Publications
  • Fagerlund A et al., "In-Depth Longitudinal Study of Listeria monocytogenes ST9 Isolates from the Meat Processing Industry: Resolving Diversity and Transmission Patterns Using Whole-Genome Sequencing.", Appl Environ Microbiol, 2020 Jul 2;86(14)
  • Fagerlund A et al., "Complete Genome Sequences of Six Listeria monocytogenes Sequence Type 9 Isolates from Meat Processing Plants in Norway.", Genome Announc, 2018 Feb 15;6(7)
SubmissionRegistration date: 10-Dec-2017
Nofima
RelevanceIndustrial
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7164
WGS master246
Genomic DNA11
SRA Experiments252
Protein Sequences747772
Publications
PubMed2
PMC2
Other datasets
BioSample252
Assembly252
Assembly details:
Assembly levelNumber of Assemblies
6
246
252
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_016899355.1ContigJAFFGR000000000
SAMN14314680
MF4536
GCA_016899345.1ContigJAFFGQ000000000
SAMN14314681
MF4537
GCA_016899315.1ContigJAFFGP000000000
SAMN14314682
MF4538
GCA_016899305.1ContigJAFFGO000000000
SAMN14314683
MF4539
GCA_016899285.1ContigJAFFGN000000000
SAMN14314684
MF4540
GCA_016899265.1ContigJAFFGM000000000
SAMN14314685
MF4541
GCA_016899245.1ContigJAFFGK000000000
SAMN14314687
MF4543
GCA_016899225.1ContigJAFFGL000000000
SAMN14314686
MF4542
GCA_016899205.1ContigJAFFGJ000000000
SAMN14314688
MF4544
GCA_016899185.1ContigJAFFGI000000000
SAMN14314689
MF4546
GCA_016899165.1ContigJAFFGH000000000
SAMN14314690
MF4547
GCA_016899145.1ContigJAFFGG000000000
SAMN14314691
MF4549
GCA_016899125.1ContigJAFFGF000000000
SAMN14314692
MF4550
GCA_016899105.1ContigJAFFGE000000000
SAMN14314693
MF4551
GCA_016899085.1ContigJAFFGD000000000
SAMN14314694
MF4552
GCA_016899055.1ContigJAFFGC000000000
SAMN14314695
MF4553
GCA_016899045.1ContigJAFFGA000000000
SAMN14314697
MF4555
GCA_016899025.1ContigJAFFGB000000000
SAMN14314696
MF4554
GCA_016899005.1ContigJAFFFZ000000000
SAMN14314698
MF4556
GCA_016898985.1ContigJAFFFX000000000
SAMN14314700
MF4558
GCA_016898965.1ContigJAFFFY000000000
SAMN14314699
MF4557
GCA_016898945.1ContigJAFFFV000000000
SAMN14314702
MF4560
GCA_016898925.1ContigJAFFFU000000000
SAMN14314703
MF4561
GCA_016898905.1ContigJAFFFW000000000
SAMN14314701
MF4559
GCA_016898845.1ContigJAFFFQ000000000
SAMN14314707
MF4676
GCA_016898885.1ContigJAFFFT000000000
SAMN14314704
MF4563
GCA_016898835.1ContigJAFFFS000000000
SAMN14314705
MF4625
GCA_016898825.1ContigJAFFFP000000000
SAMN14314708
MF4677
GCA_016898805.1ContigJAFFFR000000000
SAMN14314706
MF4629
GCA_016898785.1ContigJAFFFO000000000
SAMN14314709
MF4678
GCA_016898765.1ContigJAFFFL000000000
SAMN14314712
MF4681
GCA_016898735.1ContigJAFFFN000000000
SAMN14314710
MF4679
GCA_016898705.1ContigJAFFFK000000000
SAMN14314713
MF4682
GCA_016898725.1ContigJAFFFM000000000
SAMN14314711
MF4680
GCA_016898685.1ContigJAFFFJ000000000
SAMN14314714
MF4685
GCA_016898665.1ContigJAFFFG000000000
SAMN14314717
MF4688
GCA_016898645.1ContigJAFFFI000000000
SAMN14314715
MF4686
GCA_016898625.1ContigJAFFFE000000000
SAMN14314719
MF4690
GCA_016898595.1ContigJAFFFH000000000
SAMN14314716
MF4687
GCA_016898585.1ContigJAFFFF000000000
SAMN14314718
MF4689
GCA_016898565.1ContigJAFFFD000000000
SAMN14314720
MF4691
GCA_016898535.1ContigJAFFFC000000000
SAMN14314721
MF4692
GCA_016898515.1ContigJAFFFA000000000
SAMN14314723
MF4694
GCA_016898505.1ContigJAFFFB000000000
SAMN14314722
MF4693
GCA_016898485.1ContigJAFFEY000000000
SAMN14314725
MF4696
GCA_016898465.1ContigJAFFEZ000000000
SAMN14314724
MF4695
GCA_016898445.1ContigJAFFEW000000000
SAMN14314727
MF4995
GCA_016898425.1ContigJAFFEX000000000
SAMN14314726
MF4994
GCA_016898405.1ContigJAFFEV000000000
SAMN14314728
MF4996
GCA_016898375.1ContigJAFFET000000000
SAMN14314730
MF4998
GCA_016898365.1ContigJAFFEU000000000
SAMN14314729
MF4997
GCA_016898335.1ContigJAFFER000000000
SAMN14314732
MF5000
GCA_016898325.1ContigJAFFES000000000
SAMN14314731
MF4999
GCA_016898305.1ContigJAFFEP000000000
SAMN14314734
MF5372
GCA_016898285.1ContigJAFFEO000000000
SAMN14314735
MF5379
GCA_016898265.1ContigJAFFEQ000000000
SAMN14314733
MF5001
GCA_016898235.1ContigJAFFEM000000000
SAMN14314737
MF5383
GCA_016898225.1ContigJAFFEN000000000
SAMN14314736
MF5380
GCA_016898205.1ContigJAFFEL000000000
SAMN14314738
MF5384
GCA_016898185.1ContigJAFFEJ000000000
SAMN14314740
MF5406
GCA_016898155.1ContigJAFFEK000000000
SAMN14314739
MF5386
GCA_016898145.1ContigJAFFEI000000000
SAMN14314741
MF5628
GCA_016898125.1ContigJAFFEH000000000
SAMN14314742
MF5633
GCA_016898105.1ContigJAFFEF000000000
SAMN14314744
MF5639
GCA_016898085.1ContigJAFFEG000000000
SAMN14314743
MF5635
GCA_016898065.1ContigJAFFEE000000000
SAMN14314745
MF5642
GCA_016898045.1ContigJAFFEC000000000
SAMN14314747
MF5648
GCA_016898015.1ContigJAFFED000000000
SAMN14314746
MF5645
GCA_016898005.1ContigJAFFEB000000000
SAMN14314748
MF5649
GCA_016897985.1ContigJAFFEA000000000
SAMN14314749
MF5653
GCA_016897965.1ContigJAFFDZ000000000
SAMN14314750
MF5655
GCA_016897935.1ContigJAFFDY000000000
SAMN14314751
MF6152
GCA_016897925.1ContigJAFFDW000000000
SAMN14314753
MF6154
GCA_016897905.1ContigJAFFDU000000000
SAMN14314755
MF6156
GCA_016897885.1ContigJAFFDX000000000
SAMN14314752
MF6153
GCA_016897865.1ContigJAFFDV000000000
SAMN14314754
MF6155
GCA_016897845.1ContigJAFFDT000000000
SAMN14314756
MF6157
GCA_016897825.1ContigJAFFDR000000000
SAMN14314758
MF6159
GCA_016897805.1ContigJAFFDS000000000
SAMN14314757
MF6158
GCA_016897785.1ContigJAFFDQ000000000
SAMN14314759
MF6160
GCA_016897765.1ContigJAFFDP000000000
SAMN14314760
MF6161
GCA_016897745.1ContigJAFFDO000000000
SAMN14314761
MF6162
GCA_016897725.1ContigJAFFDM000000000
SAMN14314763
MF6167
GCA_016897705.1ContigJAFFDN000000000
SAMN14314762
MF6166
GCA_016897675.1ContigJAFFDK000000000
SAMN14314765
MF6169
GCA_016897665.1ContigJAFFDL000000000
SAMN14314764
MF6168
GCA_016897625.1ContigJAFFDI000000000
SAMN14314767
MF6171
GCA_016897635.1ContigJAFFDJ000000000
SAMN14314766
MF6170
GCA_016897595.1ContigJAFFDG000000000
SAMN14314769
MF6174
GCA_016897585.1ContigJAFFDH000000000
SAMN14314768
MF6173
GCA_016897565.1ContigJAFFDF000000000
SAMN14314770
MF6175
GCA_016897535.1ContigJAFFDD000000000
SAMN14314772
MF6177
GCA_016897525.1ContigJAFFDE000000000
SAMN14314771
MF6176
GCA_016897505.1ContigJAFFDC000000000
SAMN14314773
MF6178
GCA_016897485.1ContigJAFFDB000000000
SAMN14314774
MF6179
GCA_016897465.1ContigJAFFDA000000000
SAMN14314775
MF6180
GCA_016897445.1ContigJAFFCZ000000000
SAMN14314776
MF6181
GCA_016897425.1ContigJAFFCY000000000
SAMN14314777
MF6182
GCA_016897405.1ContigJAFFCW000000000
SAMN14314779
MF6184
GCA_016897375.1ContigJAFFCX000000000
SAMN14314778
MF6183
GCA_016897365.1ContigJAFFCU000000000
SAMN14314781
MF6195
GCA_016897345.1ContigJAFFCV000000000
SAMN14314780
MF6185
GCA_016897315.1ContigJAFFCS000000000
SAMN14314783
MF6203
GCA_016897305.1ContigJAFFCT000000000
SAMN14314782
MF6201
GCA_016897285.1ContigJAFFCR000000000
SAMN14314784
MF6204
GCA_016897265.1ContigJAFFCQ000000000
SAMN14314785
MF6205
GCA_016897245.1ContigJAFFCP000000000
SAMN14314786
MF6206
GCA_016897225.1ContigJAFFCO000000000
SAMN14314787
MF6207
GCA_016897205.1ContigJAFFCN000000000
SAMN14314788
MF6208
GCA_016897185.1ContigJAFFCL000000000
SAMN14314790
MF6210
GCA_016897165.1ContigJAFFCM000000000
SAMN14314789
MF6209
GCA_016897145.1ContigJAFFCJ000000000
SAMN14314792
MF6212
GCA_016897125.1ContigJAFFCK000000000
SAMN14314791
MF6211
GCA_016897095.1ContigJAFFCH000000000
SAMN14314794
MF6214
GCA_016897075.1ContigJAFFCI000000000
SAMN14314793
MF6213
GCA_016897065.1ContigJAFFCG000000000
SAMN14314795
MF6215
GCA_016897045.1ContigJAFFCB000000000
SAMN14314800
MF6221
GCA_016897025.1ContigJAFFCF000000000
SAMN14314796
MF6216
GCA_016897005.1ContigJAFFCC000000000
SAMN14314799
MF6220
GCA_016896985.1ContigJAFFCE000000000
SAMN14314797
MF6217
GCA_016896965.1ContigJAFFCD000000000
SAMN14314798
MF6219
GCA_016896945.1ContigJAFFCA000000000
SAMN14314801
MF6222
GCA_016896915.1ContigJAFFBY000000000
SAMN14314803
MF6224
GCA_016896905.1ContigJAFFBZ000000000
SAMN14314802
MF6223
GCA_016896885.1ContigJAFFBX000000000
SAMN14314804
MF6225
GCA_016896865.1ContigJAFFBV000000000
SAMN14314806
MF6227
GCA_016896845.1ContigJAFFBW000000000
SAMN14314805
MF6226
GCA_016896815.1ContigJAFFBU000000000
SAMN14314807
MF6228
GCA_016896805.1ContigJAFFBS000000000
SAMN14314809
MF6234
GCA_016896785.1ContigJAFFBT000000000
SAMN14314808
MF6229
GCA_016896765.1ContigJAFFBR000000000
SAMN14314810
MF6235
GCA_016896745.1ContigJAFFBQ000000000
SAMN14314811
MF6236
GCA_016896725.1ContigJAFFBP000000000
SAMN14314812
MF6237
GCA_016896705.1ContigJAFFBO000000000
SAMN14314813
MF6238
GCA_016896675.1ContigJAFFBN000000000
SAMN14314814
MF6239
GCA_016896665.1ContigJAFFBM000000000
SAMN14314815
MF6240
GCA_016896645.1ContigJAFFBL000000000
SAMN14314816
MF6241
GCA_016896625.1ContigJAFFBJ000000000
SAMN14314818
MF6243
GCA_016896595.1ContigJAFFBK000000000
SAMN14314817
MF6242
GCA_016896585.1ContigJAFFBH000000000
SAMN14314820
MF6245
GCA_016896565.1ContigJAFFBI000000000
SAMN14314819
MF6244
GCA_016896545.1ContigJAFFBG000000000
SAMN14314821
MF6246
GCA_016896515.1ContigJAFFBF000000000
SAMN14314822
MF6247
GCA_016896505.1ContigJAFFBE000000000
SAMN14314823
MF6248
GCA_016896485.1ContigJAFFBD000000000
SAMN14314824
MF6254
GCA_016896465.1ContigJAFFBC000000000
SAMN14314825
MF6255
GCA_016896445.1ContigJAFFBB000000000
SAMN14314826
MF6256
GCA_016896415.1ContigJAFFAZ000000000
SAMN14314828
MF6258
GCA_016896405.1ContigJAFFBA000000000
SAMN14314827
MF6257
GCA_016896385.1ContigJAFFAY000000000
SAMN14314829
MF6259
GCA_016896365.1ContigJAFFAV000000000
SAMN14314832
MF6262
GCA_016896345.1ContigJAFFAX000000000
SAMN14314830
MF6260
GCA_016896315.1ContigJAFFAU000000000
SAMN14314833
MF6263
GCA_016896305.1ContigJAFFAW000000000
SAMN14314831
MF6261
GCA_016896265.1ContigJAFFAS000000000
SAMN14314835
MF6267
GCA_016896245.1ContigJAFFAT000000000
SAMN14314834
MF6265
GCA_016896255.1ContigJAFFAR000000000
SAMN14314836
MF6268
GCA_016896225.1ContigJAFFAP000000000
SAMN14314838
MF6272
GCA_016896205.1ContigJAFFAQ000000000
SAMN14314837
MF6270
GCA_016896185.1ContigJAFFAO000000000
SAMN14314839
MF6273
GCA_016896155.1ContigJAFFAN000000000
SAMN14314840
MF6275
GCA_016896145.1ContigJAFFAL000000000
SAMN14314842
MF6278
GCA_016896125.1ContigJAFFAM000000000
SAMN14314841
MF6276
GCA_016896095.1ContigJAFFAJ000000000
SAMN14314844
MF6281
GCA_016896085.1ContigJAFFAK000000000
SAMN14314843
MF6279
GCA_016896065.1ContigJAFFAI000000000
SAMN14314845
MF6283
GCA_016896045.1ContigJAFFAH000000000
SAMN14314846
MF6284
GCA_016896025.1ContigJAFFAG000000000
SAMN14314847
MF6285
GCA_016895995.1ContigJAFFAF000000000
SAMN14314848
MF6286
GCA_016895985.1ContigJAFFAE000000000
SAMN14314849
MF6287
GCA_016895965.1ContigJAFFAD000000000
SAMN14314850
MF6289
GCA_016895945.1ContigJAFFAB000000000
SAMN14314852
MF6291
GCA_016895925.1ContigJAFFAC000000000
SAMN14314851
MF6290
GCA_016895905.1ContigJAFFAA000000000
SAMN14314853
MF6292
GCA_016895875.1ContigJAFEZW000000000
SAMN14314857
MF6297
GCA_016895865.1ContigJAFEZX000000000
SAMN14314856
MF6296
GCA_016895845.1ContigJAFEZY000000000
SAMN14314855
MF6295
GCA_016895825.1ContigJAFEZZ000000000
SAMN14314854
MF6294
GCA_016895805.1ContigJAFEZV000000000
SAMN14314858
MF6298
GCA_016895775.1ContigJAFEZU000000000
SAMN14314859
MF6299
GCA_016895765.1ContigJAFEZS000000000
SAMN14314861
MF6301
GCA_016895735.1ContigJAFEZR000000000
SAMN14314862
MF6302
GCA_016895725.1ContigJAFEZT000000000
SAMN14314860
MF6300
GCA_016895705.1ContigJAFEZQ000000000
SAMN14314863
MF6303
GCA_016895685.1ContigJAFEZP000000000
SAMN14314864
MF6304
GCA_016895665.1ContigJAFEZM000000000
SAMN14314867
MF6308
GCA_016895635.1ContigJAFEZN000000000
SAMN14314866
MF6307
GCA_016895625.1ContigJAFEZO000000000
SAMN14314865
MF6306
GCA_016895605.1ContigJAFEZL000000000
SAMN14314868
MF6309
GCA_016895585.1ContigJAFEZK000000000
SAMN14314869
MF6310
GCA_016895565.1ContigJAFEZJ000000000
SAMN14314870
MF6311
GCA_016895545.1ContigJAFEZI000000000
SAMN14314871
MF6312
GCA_016895525.1ContigJAFEZG000000000
SAMN14314873
MF6316
GCA_016895505.1ContigJAFEZH000000000
SAMN14314872
MF6313
GCA_016895485.1ContigJAFEZF000000000
SAMN14314874
MF6317
GCA_016895455.1ContigJAFEZE000000000
SAMN14314875
MF6318
GCA_016895445.1ContigJAFEZD000000000
SAMN14314876
MF6320
GCA_016895425.1ContigJAFEZC000000000
SAMN14314877
MF6324
GCA_016895405.1ContigJAFEZA000000000
SAMN14314879
MF6330
GCA_016895385.1ContigJAFEZB000000000
SAMN14314878
MF6329
GCA_016895365.1ContigJAFEYZ000000000
SAMN14314880
MF6332
GCA_016895345.1ContigJAFEYY000000000
SAMN14314881
MF6334
GCA_016895325.1ContigJAFEYX000000000
SAMN14314882
MF6337
GCA_016895295.1ContigJAFEYW000000000
SAMN14314883
MF6338
GCA_016895285.1ContigJAFEYV000000000
SAMN14314884
MF6339
GCA_016895265.1ContigJAFEYU000000000
SAMN14314885
MF6343
GCA_016895245.1ContigJAFEYT000000000
SAMN14314886
MF6345
GCA_016895225.1ContigJAFEYS000000000
SAMN14314887
MF6346
GCA_016895205.1ContigJAFEYQ000000000
SAMN14314889
MF6350
GCA_016895185.1ContigJAFEYR000000000
SAMN14314888
MF6348
GCA_016895165.1ContigJAFEYP000000000
SAMN14314890
MF6356
GCA_016895115.1ContigJAFEYN000000000
SAMN14314892
MF6578
GCA_016895125.1ContigJAFEYM000000000
SAMN14314893
MF6579
GCA_016895105.1ContigJAFEYO000000000
SAMN14314891
MF6577
GCA_016895085.1ContigJAFEYL000000000
SAMN14314894
MF6582
GCA_016895065.1ContigJAFEYK000000000
SAMN14314895
MF6587
GCA_016895025.1ContigJAFEYJ000000000
SAMN14314896
MF6588
GCA_016895015.1ContigJAFEYH000000000
SAMN14314898
MF6590
GCA_016895005.1ContigJAFEYI000000000
SAMN14314897
MF6589
GCA_016894985.1ContigJAFEYG000000000
SAMN14314899
MF6591
GCA_016894965.1ContigJAFEYF000000000
SAMN14314900
MF6592
GCA_016894945.1ContigJAFEYE000000000
SAMN14314901
MF6593
GCA_016894925.1ContigJAFEYA000000000
SAMN14314905
MF6709
GCA_016894875.1ContigJAFEYC000000000
SAMN14314903
MF6706
GCA_016894895.1ContigJAFEYD000000000
SAMN14314902
MF6705
GCA_016894865.1ContigJAFEYB000000000
SAMN14314904
MF6707
GCA_016894845.1ContigJAFEXZ000000000
SAMN14314906
MF6710
GCA_016894825.1ContigJAFEXX000000000
SAMN14314908
MF6799
GCA_016894805.1ContigJAFEXY000000000
SAMN14314907
MF6797
GCA_016894785.1ContigJAFEXV000000000
SAMN14314910
MF6801
GCA_016894765.1ContigJAFEXW000000000
SAMN14314909
MF6800
GCA_016894745.1ContigJAFEXU000000000
SAMN14314911
MF6802
GCA_016894685.1ContigJAFEXT000000000
SAMN14314912
MF6803
GCA_016894725.1ContigJAFEXS000000000
SAMN14314913
MF6809
GCA_016894695.1ContigJAFEXR000000000
SAMN14314914
MF6810
GCA_016894665.1ContigJAFEXQ000000000
SAMN14314915
MF6811
GCA_016894645.1ContigJAFEXO000000000
SAMN14314917
MF6818
GCA_016894615.1ContigJAFEXL000000000
SAMN14314920
MF6821
GCA_016894605.1ContigJAFEXN000000000
SAMN14314918
MF6819
GCA_016894585.1ContigJAFEXP000000000
SAMN14314916
MF6817
GCA_016894565.1ContigJAFEXM000000000
SAMN14314919
MF6820
GCA_016894515.1ContigJAFEXK000000000
SAMN14314921
MF6822
GCA_016894505.1ContigJAFEXJ000000000
SAMN14314922
MF6823
GCA_016894485.1ContigJAFEXI000000000
SAMN14314923
MF6824
GCA_016894495.1ContigJAFEXG000000000
SAMN14314925
MF6837
GCA_016894465.1ContigJAFEXH000000000
SAMN14314924
MF6836
GCA_002831485.1Complete genomeSAMN08056486
MF4626
GCA_002848505.1Complete genomeSAMN08056483
MF4545
GCA_002848485.1Complete genomeSAMN08056488
MF6172
GCA_002848465.1Complete genomeSAMN08056487
MF4697
GCA_002848425.1Complete genomeSAMN08056484
MF4562
GCA_002843525.1Complete genomeSAMN08056485
MF4624
SRA Data Details
ParameterValue
Data volume, Gbases229
Data volume, Tbytes0.11

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