ID 362716 - BioProject

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Accession: PRJEB10280 ID: 362716

Strain variation in the human periodontopathogen Porphyromonas gingivalis

Chronic periodontitis is a prevalent bacterially associated inflammatory disease of the supporting tissues of the tooth that is also associated with a range of systemic diseases and disorders. More...

Accession	PRJEB10280; ENA-SUBMISSION: ERA465225
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 20-Jan-2017 Melbourne Dental School, University of Melbourne

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	726
WGS master	11
SRA Experiments	16
Protein Sequences	19650
Other datasets
BioSample	16
Assembly	11

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

10
1
11

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_900157245.1	FUGF00000000	SAMEA3505346	15_9	Porphyromonas gingivalis
GCA_900157285.1	FUGG00000000	SAMEA3505345	13_1	Porphyromonas gingivalis
GCA_900157295.1	FUFE00000000	SAMEA3505344	11A	Porphyromonas gingivalis
GCA_900157275.1	FUFG00000000	SAMEA3505347	84_3	Porphyromonas gingivalis
GCA_900157225.1	FUFD00000000	SAMEA3505343	7BTORR	Porphyromonas gingivalis
GCA_900157235.1	FUFI00000000	SAMEA3505351	SU60	Porphyromonas gingivalis
GCA_900157325.1	FUFC00000000	SAMEA3505342	3A1	Porphyromonas gingivalis
GCA_900157255.1	FUFH00000000	SAMEA3505348	ATCC 49417	Porphyromonas gingivalis
GCA_900157345.1	FUFJ00000000	SAMEA3505350	AFR5B1	Porphyromonas gingivalis
GCA_900157215.1	FUFB00000000	SAMEA3505341	3_3	Porphyromonas gingivalis
GCA_900157265.1	FUFF00000000	SAMEA3505349	A7A1_28	Porphyromonas gingivalis

SRA Data Details

Parameter	Value
Data volume, Gbases	26
Data volume, Mbytes	17822

Supplemental Content

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Nucleotide
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Protein
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SRA
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WGS master
Link to WGS master record(s)

LinkOut to external resources

2858656345: Porphyromonas gingivalis ATCC 49417 [Integrated Microbial Genomes]
2858656345: Porphyromonas gingivalis ATCC 49417
Integrated Microbial Genomes
2869007135: Porphyromonas gingivalis SU60/YH522 [Integrated Microbial Genomes]
2869007135: Porphyromonas gingivalis SU60/YH522
Integrated Microbial Genomes
2869000616: Porphyromonas gingivalis 3_3 [Integrated Microbial Genomes]
2869000616: Porphyromonas gingivalis 3_3
Integrated Microbial Genomes

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BioProject Links for Protein (Select 1139927926) (1)
BioProject
Porphyromonas gingivalis strain WW3039 NODE_5_length_92563_cov_16.1301_ID_25917,...
Porphyromonas gingivalis strain WW3039 NODE_5_length_92563_cov_16.1301_ID_25917, whole genome shotgun sequence
gi|1253820468|gb|NSLN01000005.1||gn :NSLN01|NODE_5_length_92563_cov_16.1301_ID_25917

Nucleotide
YjjG family noncanonical pyrimidine nucleotidase [Porphyromonas gingivalis]
YjjG family noncanonical pyrimidine nucleotidase [Porphyromonas gingivalis]
gi|2437753006|gnl|PRJNA874424|NY148 0|gb|WCG01351.1|

Protein
mitochondrial carnitine/acylcarnitine carrier-like protein [Ipomoea triloba]
mitochondrial carnitine/acylcarnitine carrier-like protein [Ipomoea triloba]
gi|1766849144|ref|XP_031128645.1|

Protein

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