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Accession: PRJNA246471 ID: 246471

Gammaproteobacteria

Genome sequencing of KPC-producing Gammaproteobacteria

Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. More...
AccessionPRJNA246471
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismGammaproteobacteria[Taxonomy ID: 1236]
Bacteria; Pseudomonadota; Gammaproteobacteria
Publications
  • Sheppard AE et al., "Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.", Genome Announc, 2016 Jan 28;4(1)
  • Mathers AJ et al., "Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing.", Antimicrob Agents Chemother, 2015 Mar;59(3):1656-63
SubmissionRegistration date: 6-Jan-2017
University of Oxford
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)160
WGS master1
Genomic DNA147
SRA Experiments299
Protein Sequences146349
Publications
PubMed2
PMC2
Other datasets
BioSample286
Assembly27
Assembly details:
Assembly levelNumber of Assemblies
26
1
27
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_001022275.1Complete genomeSAMN03733754
CAV1741
GCA_001022155.1Complete genomeSAMN03733741
CAV1321
GCA_004344985.1Complete genomeSAMN11055879
CAV1857
GCA_001022095.1Complete genomeSAMN03733641
CAV1043
GCA_001874505.1Complete genomeSAMN03733727
CAV1176
GCA_001022075.1Complete genomeSAMN03733769
CAV1411
GCA_001022055.1Complete genomeSAMN03733827
CAV1668
GCA_001022255.1Complete genomeSAMN03733830
CAV1669
GCA_001022015.1Complete genomeSAMN03733748
CAV1311
GCA_001021995.1Complete genomeSAMN03733745
CAV1320
GCA_001938605.1ContigMRWY00000000
SAMN03733822
CAV1755
GCA_001022195.1Complete genomeSAMN03733738
CAV1374
GCA_001022115.1Complete genomeSAMN03733750
CAV1335
GCA_001022295.1Complete genomeSAMN03733663
CAV1099
GCA_001970835.1Complete genomeSAMN03733848
CAV1752
GCA_001870185.1Complete genomeSAMN03733631
CAV1015
GCA_001870165.1Complete genomeSAMN03024573
CAV1016
GCA_001902255.1Complete genomeSAMN03733793
CAV1453
GCA_001902535.1Complete genomeSAMN03733765
CAV1417
GCA_001908515.1Complete genomeSAMN03024576
CAV1042
GCA_001908715.1Complete genomeSAMN03024585
CAV1217
GCA_001456135.1Complete genomeSAMN03733725
CAV1193
GCA_001022035.1Complete genomeSAMN03024610
CAV1392
GCA_001022235.1Complete genomeSAMN03024583
CAV1596
GCA_001022175.1Complete genomeSAMN03024590
CAV1344
GCA_001022135.1Complete genomeSAMN03733692
CAV1151
GCA_001022215.1Complete genomeSAMN03733805
CAV1492
SRA Data Details
ParameterValue
Data volume, Gbases126
Data volume, Mbytes71662

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