Lates calcarifer isolate:ASB-BC8 (ID 345597) - BioProject

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Accession: PRJNA345597 ID: 345597

Lates calcarifer isolate:ASB-BC8 (barramundi perch)

Lates calcarifer isolate:ASB-BC8 RefSeq Genome sequencing and assembly

See Genome Information for Lates calcarifer

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43 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA294489). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA345597
Data Type	RefSeq Genome sequencing and assembly
Scope	Monoisolate
Organism	Lates calcarifer[Taxonomy ID: 8187] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates; Lates calcarifer
Publications (total 5) Less...	Zoccola E et al., "Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer).", Mol Immunol, 2017 Mar;83:33-45 More... Zoccola E et al., "Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer).", Mol Immunol, 2017 Mar;83:33-45 Vij S et al., "Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.", PLoS Genet, 2016 Apr;12(4):e1005954 Ravi P et al., "Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer).", Reprod Biol Endocrinol, 2014 Jan 9;12:5 Kuznetsova IS et al., "Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome.", Front Genet, 2014;5:223 Lin G et al., "The complete mitochondrial genome sequence and characterization of single-nucleotide polymorphisms in the control region of the Asian seabass (Lates calcarifer).", Mar Biotechnol (NY), 2006 Jan-Feb;8(1):71-9 Less...
Submission	Registration date: 9-May-2016 Temasek Life Sciences Laboratory
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	56661
Transcript	53641
Protein Sequences	45352
Publications
PubMed	5
PMC	4
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_001640805.2	Chromosome	LLXD00000000	25	SAMN04026617	Lates calcarifer

Related GenBank Project

PRJNA294489 : Lates calcarifer isolate:ASB-BC8 Genome sequencing and assembly

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Lates calcarifer isolate:ASB-BC8 (barramundi perch)

Lates calcarifer isolate:ASB-BC8 RefSeq Genome sequencing and assembly

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