Rhizobium (ID 293118) - BioProject

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Accession: PRJNA293118 ID: 293118

Rhizobium

The genomes of a Rhizobium population recovered from the roots and rhizosphere of common bean genome sequencing and assembly

Genomic comparative analysis of the genomes of a Rhizobium population recovered from the roots and rhizosphere of common bean in order to know the genomic composition and the extent of genetic isolation among Rhizobium strains as well as the genetic variations in the symbiotic plasmid.

Accession	PRJNA293118
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Rhizobium[Taxonomy ID: 379] Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
Grants	"Análisis de la estructura de los genomas de poblaciones de Rhizobium asociadas al frijol en nódulos y rizosfera" (Grant ID 2084143, Programa de Apoyo a Proyectos de Investigación e Inovación Tecnológica) "Pangenome determination of R. etli and its comparison with species and biovarieties of Rhizobium symbionts of common bean" (Grant ID CB131499, Consejo Nacional de Ciencia y Tecnologia, Mexico.)
Submission	Registration date: 29-Jun-2017 Centro de Ciencias Genomicas UNAM
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	459
WGS master	8
Genomic DNA	137
Protein Sequences	203476
Other datasets
BioSample	33
Assembly	33

Assembly details:

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Assembly level

Number of Assemblies

23
2
8
33

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_001664265.1		5	SAMN03998640	N561	Rhizobium esperanzae
GCA_001664245.1		5	SAMN03998632	R620	Rhizobium phaseoli
GCA_001664205.1		5	SAMN03998633	R630	Rhizobium phaseoli
GCA_001664185.1		5	SAMN03998636	R744	Rhizobium phaseoli
GCA_001664225.1		5	SAMN03998635	R723	Rhizobium phaseoli
GCA_001664125.1		5	SAMN03998628	N831	Rhizobium phaseoli
GCA_001664165.1		5	SAMN03998624	N161	Rhizobium phaseoli
GCA_001664405.1		6	SAMN03998627	N771	Rhizobium phaseoli
GCA_001664385.1		5	SAMN03998634	R650	Rhizobium phaseoli
GCA_001664445.1		5	SAMN03998631	R611	Rhizobium phaseoli
GCA_001664285.1		5	SAMN03998630	N931	Rhizobium phaseoli
GCA_001664365.1		6	SAMN03998626	N671	Rhizobium phaseoli
GCA_001664105.1		5	SAMN03998625	N261	Rhizobium phaseoli
GCA_001664425.1		6	SAMN03998629	N841	Rhizobium phaseoli
GCA_001664345.1		5	SAMN03998637	N113	Rhizobium sp. N113
GCA_002211295.1	LOKU00000000		SAMN04304756	N122	Rhizobium sp. N122
GCA_001664305.1		6	SAMN03998638	N1314	Rhizobium sp. N1314
GCA_001664085.1		6	SAMN03998639	N1341	Rhizobium sp. N1341
GCA_001664485.1		6	SAMN03998646	N324	Rhizobium sp. N324
GCA_002245285.1	LOID00000000	5	SAMN03998649	N4311	Rhizobium sp. N4311
GCA_001675095.1		5	SAMN03998647	N541	Rhizobium sp. N541
GCA_001664325.1		5	SAMN03998641	N621	Rhizobium sp. N621
GCA_001664465.1		5	SAMN03998642	N6212	Rhizobium sp. N6212
GCA_001664145.1		6	SAMN03998643	N731	Rhizobium sp. N731
GCA_001664545.1		6	SAMN03998644	N741	Rhizobium sp. N741
GCA_001664525.1		5	SAMN03998645	N871	Rhizobium sp. N871
GCA_001675075.1		5	SAMN03998648	N941	Rhizobium sp. N941
GCA_002211395.1	LOKV00000000		SAMN04304757	R339	Rhizobium sp. R339
GCA_002211305.1	LOKW00000000		SAMN04304758	R634	Rhizobium sp. R634
GCA_002211285.1	LOKX00000000		SAMN04304759	R635	Rhizobium sp. R635
GCA_002211315.1	LOKY00000000		SAMN04304760	R693	Rhizobium sp. R693
GCA_002211365.1	LOKZ00000000		SAMN04304761	R711	Rhizobium sp. R711
GCA_002211385.1	LOLA00000000		SAMN04304762	R72	Rhizobium sp. R72

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Rhizobium

The genomes of a Rhizobium population recovered from the roots and rhizosphere of common bean genome sequencing and assembly

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