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Accession: PRJNA273983 ID: 273983

Xanthomonas

Comparative genomics of different strains and species of Xanthomonas

Sequencing different strains and species of Xanthomonas related with different types of citrus canker. More...

Accession	PRJNA273983
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Xanthomonas[Taxonomy ID: 338] Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
Publications (total 3) Less...	Patané JSL et al., "Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.", BMC Genomics, 2019 Sep 9;20(1):700 More... Patané JSL et al., "Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.", BMC Genomics, 2019 Sep 9;20(1):700 Fonseca NP et al., "Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR.", PeerJ, 2019;7:e7676 Fonseca NP et al., "Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes.", Front Microbiol, 2019;10:2361 Less...
Grants	"BIGA" (Grant ID 051/2013, CAPES Foundation)
Submission	Registration date: 14-May-2018 UNESP-FCAV
Related Resources	Xanthomonas Genome Project
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1941
WGS master	11
Genomic DNA	11
SRA Experiments	7
Protein Sequences	63179
Publications
PubMed	3
PMC	3
Other datasets
BioSample	16
Assembly	15

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

Scaffold

Contig

4
9
2
15

Assembly	Level	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002079965.1			2	SAMN03317022	FDC 1561	Xanthomonas citri pv. aurantifolii
GCA_001610915.1			2	SAMN03835495	1566	Xanthomonas citri pv. aurantifolii
GCA_001610815.1			4	SAMN03317027	FDC 1609	Xanthomonas citri pv. aurantifolii
GCA_001610795.1			3	SAMN03317020	FDC 1559	Xanthomonas citri pv. aurantifolii
GCA_003122665.1		LAUG00000000		SAMN03317024	FDC 1682	Xanthomonas citri pv. citri
GCA_003122625.1		LAUF00000000		SAMN03317029	FDC 654	Xanthomonas citri pv. citri
GCA_003122605.1		LAUE00000000		SAMN03317028	FDC 628	Xanthomonas citri pv. citri
GCA_003122575.1		LAUQ00000000		SAMN03317019	FDC 636	Xanthomonas citri pv. citri
GCA_003122565.1		LAUP00000000		SAMN03317018	FDC 828	Xanthomonas citri pv. citri
GCA_003122545.1		LAUN00000000		SAMN03317017	FDC 1662	Xanthomonas citri pv. citri
GCA_004329275.1		LAUI00000000		SAMN03317030	FDC 763	Xanthomonas citri pv. aurantifolii
GCA_004329295.1		LAUJ00000000		SAMN03317026	FDC 867	Xanthomonas citri pv. aurantifolii
GCA_004329265.1		LAUH00000000		SAMN03317023	FDC 535	Xanthomonas citri pv. aurantifolii
GCA_005059795.1		LAUR00000000		SAMN03317021	FDC 1637	Xanthomonas euvesicatoria pv. citrumelonis
GCA_005059785.1		LAUO00000000		SAMN03317016	FDC 1510	Xanthomonas euvesicatoria pv. citrumelonis

SRA Data Details

Parameter	Value
Data volume, Gbases	14
Data volume, Mbytes	7868

Supplemental Content

Related information

Assembly
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BioSample
All related BioSamples
Full text in PMC
PMC links
Genome
Related Genomes
Genomic DNA
Link to genomic DNA records
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
Related Genes
Genes related to a genome project
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

Related Resources

Xanthomonas Genome Project
Xanthomonas Genome Project

LinkOut to external resources

2791355357: Xanthomonas citri aurantifolii FDC 1609 [Integrated Microbial Genomes]
2791355357: Xanthomonas citri aurantifolii FDC 1609
Integrated Microbial Genomes
2791355356: Xanthomonas citri aurantifolii FDC 1559 [Integrated Microbial Genomes]
2791355356: Xanthomonas citri aurantifolii FDC 1559
Integrated Microbial Genomes
2791355355: Xanthomonas citri aurantifolii 1566 [Integrated Microbial Genomes]
2791355355: Xanthomonas citri aurantifolii 1566
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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Comparative genomics of different strains and species of Xanthomonas

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