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Links from Nucleotide

Accession: PRJNA299404 ID: 299404

biofilm metagenome

hospital shower hose biofilms metagenomes

Drinking water (DW) biofilms are well known to harbor opportunistic pathogens, however, these biofilm communities remain poorly characterized by culture-independent approaches that circumvent the limitations of conventional monitoring efforts. More...
AccessionPRJNA299404
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismbiofilm metagenome[Taxonomy ID: 718308]
unclassified sequences; metagenomes; ecological metagenomes; biofilm metagenome
Grants
  • "National Research Council Senior Research Fellowship" (Grant ID NRC, National Research Council)
  • "Colciencias doctoral scholarship" (Grant ID col529, Colombian Government)
SubmissionRegistration date: 10-Feb-2016
- Georgia Institute of Technology
- U.S. Environmental Protection Agency
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)44094
WGS master89
SRA Experiments5
Other datasets
BioSample95
Assembly89
Assembly details:
Assembly levelNumber of Assemblies
89
89
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001555775.1ContigLSHP00000000SAMN04299412
CCH4-A2
GCA_001556145.1ContigLSIH00000000SAMN04299431
CCH3-G3
GCA_001557145.1ContigLSKS00000000SAMN04299497
CCH12-A4
GCA_001556365.1ContigLSIS00000000SAMN04299443
CCH1-A6
GCA_001555795.1ContigLSHL00000000SAMN04299408
CCH10-E1
GCA_001556925.1ContigLSKB00000000SAMN04299478
CCH11-A4
GCA_001557245.1ContigLSHW00000000SAMN04299420
CCH13-A3
GCA_001555705.1ContigLSHN00000000SAMN04299410
CCH13-E1
GCA_001555935.1ContigLSHV00000000SAMN04299418
CCH15-G10
GCA_001557415.1ContigLSKK00000000SAMN04299487
CCH2-A2
GCA_001555805.1ContigLSHO00000000SAMN04299411
CCH2-E1
GCA_001555695.1ContigLSHH00000000SAMN04299404
CCH3-A3
GCA_001555885.1ContigLSHR00000000SAMN04299414
CCH3-E3
GCA_001555995.1ContigLSHZ00000000SAMN04299423
CCH4-D12
GCA_001556295.1ContigLSIO00000000SAMN04299439
CCH5-A3
GCA_001555955.1ContigLSHY00000000SAMN04299422
CCH5-E3
GCA_001555715.1ContigLSHJ00000000SAMN04299406
CCH6-A6
GCA_001555865.1ContigLSHU00000000SAMN04299417
CCH7-E1
GCA_001555855.1ContigLSHS00000000SAMN04299415
CCH8-A3
GCA_001557185.1ContigLSHK00000000SAMN04299407
CCH8-E1
GCA_001557175.1ContigLSHM00000000SAMN04299409
CCH9-A1
GCA_001555725.1ContigLSHI00000000SAMN04299405
CCH9-F3
GCA_001556485.1ContigLSIY00000000SAMN04299449
CCH1-B1
GCA_001556255.1ContigLSIN00000000SAMN04299438
CCH10-C7
GCA_001556245.1ContigLSIM00000000SAMN04299437
CCH4-A6
GCA_001556725.1ContigLSJL00000000SAMN04299462
CCH5-A9
GCA_001556045.1ContigLSIC00000000SAMN04299426
CCH5-F6
GCA_001556425.1ContigLSIV00000000SAMN04299446
CCH4-E1
GCA_001556585.1ContigLSJD00000000SAMN04299454
CCH5-E12
GCA_001556515.1ContigLSJA00000000SAMN04299451
CCH9-E1
GCA_001556235.1ContigLSIL00000000SAMN04299436
CCH4-E10
GCA_001556325.1ContigLSIQ00000000SAMN04299441
CCH12-A10
GCA_001556405.1ContigLSIU00000000SAMN04299445
CCH4-C5
GCA_001557475.1ContigLSKR00000000SAMN04299494
CCH6-D9
GCA_001556795.1ContigLSJT00000000SAMN04299470
CCH2-D9
GCA_001557455.1ContigLSKM00000000SAMN04299489
CCH7-E3
GCA_001556805.1ContigLSJU00000000SAMN04299471
CCH12-G6
GCA_001556895.1ContigLSJZ00000000SAMN04299476
CCH6-A1
GCA_001557325.1ContigLSJS00000000SAMN04299469
CCH17-B8
GCA_001557305.1ContigLSJQ00000000SAMN04299467
CCH8-A2
GCA_001556685.1ContigLSJJ00000000SAMN04299460
CCH1-A1
GCA_001556555.1ContigLSJB00000000SAMN04299452
CCH3-A4
GCA_001556715.1ContigLSJK00000000SAMN04299461
CCH6-E1
GCA_001556315.1ContigLSIP00000000SAMN04299440
CCH19-E1
GCA_001557115.1ContigLSKQ00000000SAMN04299493
CCH5-A1
GCA_001556995.1ContigLSKF00000000SAMN04299482
CCH12-C2
GCA_001556475.1ContigLSIX00000000SAMN04299448
CCH5-D2
GCA_001557075.1ContigLSKN00000000SAMN04299490
CCH7-A2
GCA_001557335.1ContigLSJW00000000SAMN04299473
CCH5-D1
GCA_001556945.1ContigLSKC00000000SAMN04299479
CCH3-E2
GCA_001556905.1ContigLSKA00000000SAMN04299477
CCH10-A2
GCA_001557045.1ContigLSKL00000000SAMN04299488
CCH12-A2
GCA_001556335.1ContigLSIR00000000SAMN04299442
CCH7-A10
GCA_001556395.1ContigLSIT00000000SAMN04299444
CCH10-H12
GCA_001556165.1ContigLSII00000000SAMN04299433
CCH6-A12
GCA_001556015.1ContigLSIA00000000SAMN04299424
CCH12-A3
GCA_001557375.1ContigLSKE00000000SAMN04299481
CCH12-B4
GCA_001557235.1ContigLSJI00000000SAMN04299459
CCH9-H3
GCA_001556645.1ContigLSJG00000000SAMN04299457
CCH7-A1
GCA_001556105.1ContigLSIF00000000SAMN04299429
CCH9-G4
GCA_001556125.1ContigLSIG00000000SAMN04299430
CCH10-E5
GCA_001556825.1ContigLSJV00000000SAMN04299472
CCH11-D2
GCA_001556855.1ContigLSJX00000000SAMN04299474
CCH2-A4
GCA_001556025.1ContigLSIB00000000SAMN04299425
CCH3-A5
GCA_001557295.1ContigLSJP00000000SAMN04299466
CCH6-A4
GCA_001556775.1ContigLSJR00000000SAMN04299468
CCH8-D1
GCA_001556215.1ContigLSIK00000000SAMN04299435
CCH9-A3
GCA_001557035.1ContigLSKJ00000000SAMN04299486
CCH5-H10
GCA_001556865.1ContigLSJY00000000SAMN04299475
CCH11-B1
GCA_001556185.1ContigLSIJ00000000SAMN04299434
CCH10-B3
GCA_001557105.1ContigLSKP00000000SAMN04299492
CCH13-B11
GCA_001557085.1ContigLSKO00000000SAMN04299491
CCH15-A1
GCA_001557005.1ContigLSKG00000000SAMN04299483
CCH15-F11
GCA_001556095.1ContigLSIE00000000SAMN04299428
CCH16-B10
GCA_001555895.1ContigLSHT00000000SAMN04299416
CCH18-B1
GCA_001557405.1ContigLSKI00000000SAMN04299485
CCH18-H6
GCA_001556975.1ContigLSKD00000000SAMN04299480
CCH19-C6
GCA_001556565.1ContigLSJC00000000SAMN04299453
CCH20-B6
GCA_001555965.1ContigLSHX00000000SAMN04299421
CCH21-G11
GCA_001555785.1ContigLSHQ00000000SAMN04299413
CCH5-A5
GCA_001557395.1ContigLSKH00000000SAMN04299484
CCH5-D11
GCA_001557215.1ContigLSJM00000000SAMN04299463
CCH9-E2
GCA_001556735.1ContigLSJO00000000SAMN04299465
CCH9-F2
GCA_001556635.1ContigLSJF00000000SAMN04299456
CCH9-H8
GCA_001556435.1ContigLSIW00000000SAMN04299447
CCH5-D3
GCA_001557225.1ContigLSJN00000000SAMN04299464
CCH8-C6
GCA_001556605.1ContigLSJE00000000SAMN04299455
CCH8-G7
GCA_001556505.1ContigLSIZ00000000SAMN04299450
CCH8-H5
GCA_001556675.1ContigLSJH00000000SAMN04299458
CCH5-B3
SRA Data Details
ParameterValue
Data volume, Gbases25
Data volume, Mbytes17372

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