biofilm metagenome (ID 299404) - BioProject

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Accession: PRJNA299404 ID: 299404

biofilm metagenome

hospital shower hose biofilms metagenomes

Drinking water (DW) biofilms are well known to harbor opportunistic pathogens, however, these biofilm communities remain poorly characterized by culture-independent approaches that circumvent the limitations of conventional monitoring efforts. More...

Accession	PRJNA299404
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	biofilm metagenome[Taxonomy ID: 718308] unclassified sequences; metagenomes; ecological metagenomes; biofilm metagenome
Grants	"National Research Council Senior Research Fellowship" (Grant ID NRC, National Research Council) "Colciencias doctoral scholarship" (Grant ID col529, Colombian Government)
Submission	Registration date: 10-Feb-2016 - Georgia Institute of Technology - U.S. Environmental Protection Agency
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	44094
WGS master	89
SRA Experiments	5
Other datasets
BioSample	95
Assembly	89

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

89
89

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001555775.1	LSHP00000000	SAMN04299412	CCH4-A2	Acidovorax delafieldii
GCA_001556145.1	LSIH00000000	SAMN04299431	CCH3-G3	Acidovorax delafieldii
GCA_001557145.1	LSKS00000000	SAMN04299497	CCH12-A4	Acidovorax sp. CCH12-A4
GCA_001556365.1	LSIS00000000	SAMN04299443	CCH1-A6	Blastomonas sp. CCH1-A6
GCA_001555795.1	LSHL00000000	SAMN04299408	CCH10-E1	Blastomonas sp. CCH10-E1
GCA_001556925.1	LSKB00000000	SAMN04299478	CCH11-A4	Blastomonas sp. CCH11-A4
GCA_001557245.1	LSHW00000000	SAMN04299420	CCH13-A3	Blastomonas sp. CCH13-A3
GCA_001555705.1	LSHN00000000	SAMN04299410	CCH13-E1	Blastomonas sp. CCH13-E1
GCA_001555935.1	LSHV00000000	SAMN04299418	CCH15-G10	Blastomonas sp. CCH15-G10
GCA_001557415.1	LSKK00000000	SAMN04299487	CCH2-A2	Blastomonas sp. CCH2-A2
GCA_001555805.1	LSHO00000000	SAMN04299411	CCH2-E1	Blastomonas sp. CCH2-E1
GCA_001555695.1	LSHH00000000	SAMN04299404	CCH3-A3	Blastomonas sp. CCH3-A3
GCA_001555885.1	LSHR00000000	SAMN04299414	CCH3-E3	Blastomonas sp. CCH3-E3
GCA_001555995.1	LSHZ00000000	SAMN04299423	CCH4-D12	Blastomonas sp. CCH4-D12
GCA_001556295.1	LSIO00000000	SAMN04299439	CCH5-A3	Blastomonas sp. CCH5-A3
GCA_001555955.1	LSHY00000000	SAMN04299422	CCH5-E3	Blastomonas sp. CCH5-E3
GCA_001555715.1	LSHJ00000000	SAMN04299406	CCH6-A6	Blastomonas sp. CCH6-A6
GCA_001555865.1	LSHU00000000	SAMN04299417	CCH7-E1	Blastomonas sp. CCH7-E1
GCA_001555855.1	LSHS00000000	SAMN04299415	CCH8-A3	Blastomonas sp. CCH8-A3
GCA_001557185.1	LSHK00000000	SAMN04299407	CCH8-E1	Blastomonas sp. CCH8-E1
GCA_001557175.1	LSHM00000000	SAMN04299409	CCH9-A1	Blastomonas sp. CCH9-A1
GCA_001555725.1	LSHI00000000	SAMN04299405	CCH9-F3	Blastomonas sp. CCH9-F3
GCA_001556485.1	LSIY00000000	SAMN04299449	CCH1-B1	Bradyrhizobium sp. CCH1-B1
GCA_001556255.1	LSIN00000000	SAMN04299438	CCH10-C7	Bradyrhizobium sp. CCH10-C7
GCA_001556245.1	LSIM00000000	SAMN04299437	CCH4-A6	Bradyrhizobium sp. CCH4-A6
GCA_001556725.1	LSJL00000000	SAMN04299462	CCH5-A9	Bradyrhizobium sp. CCH5-A9
GCA_001556045.1	LSIC00000000	SAMN04299426	CCH5-F6	Bradyrhizobium sp. CCH5-F6
GCA_001556425.1	LSIV00000000	SAMN04299446	CCH4-E1	Caulobacter sp. CCH4-E1
GCA_001556585.1	LSJD00000000	SAMN04299454	CCH5-E12	Caulobacter sp. CCH5-E12
GCA_001556515.1	LSJA00000000	SAMN04299451	CCH9-E1	Caulobacter sp. CCH9-E1
GCA_001556235.1	LSIL00000000	SAMN04299436	CCH4-E10	Chryseobacterium sp. CCH4-E10
GCA_001556325.1	LSIQ00000000	SAMN04299441	CCH12-A10	Comamonadaceae bacterium CCH12-A10
GCA_001556405.1	LSIU00000000	SAMN04299445	CCH4-C5	Comamonadaceae bacterium CCH4-C5
GCA_001557475.1	LSKR00000000	SAMN04299494	CCH6-D9	Corynebacterium durum
GCA_001556795.1	LSJT00000000	SAMN04299470	CCH2-D9	Dermacoccus sp. CCH2-D9
GCA_001556715.1	LSJK00000000	SAMN04299461	CCH6-E1	Erythrobacter donghaensis
GCA_001556685.1	LSJJ00000000	SAMN04299460	CCH1-A1	Erythrobacter donghaensis
GCA_001556805.1	LSJU00000000	SAMN04299471	CCH12-G6	Erythrobacter donghaensis
GCA_001556895.1	LSJZ00000000	SAMN04299476	CCH6-A1	Erythrobacter donghaensis
GCA_001557455.1	LSKM00000000	SAMN04299489	CCH7-E3	Erythrobacter donghaensis
GCA_001557325.1	LSJS00000000	SAMN04299469	CCH17-B8	Erythrobacter donghaensis
GCA_001557305.1	LSJQ00000000	SAMN04299467	CCH8-A2	Erythrobacter donghaensis
GCA_001556315.1	LSIP00000000	SAMN04299440	CCH19-E1	Erythrobacter donghaensis
GCA_001556555.1	LSJB00000000	SAMN04299452	CCH3-A4	Erythrobacter donghaensis
GCA_001557115.1	LSKQ00000000	SAMN04299493	CCH5-A1	Erythrobacter sp. CCH5-A1
GCA_001556995.1	LSKF00000000	SAMN04299482	CCH12-C2	Erythrobacteraceae bacterium CCH12-C2
GCA_001556475.1	LSIX00000000	SAMN04299448	CCH5-D2	Methylobacterium sp. CCH5-D2
GCA_001557075.1	LSKN00000000	SAMN04299490	CCH7-A2	Methylobacterium sp. CCH7-A2
GCA_001557335.1	LSJW00000000	SAMN04299473	CCH5-D1	Microbacterium sp. CCH5-D1
GCA_001556945.1	LSKC00000000	SAMN04299479	CCH3-E2	Micrococcus luteus
GCA_001556905.1	LSKA00000000	SAMN04299477	CCH10-A2	Mycolicibacterium mucogenicum
GCA_001557045.1	LSKL00000000	SAMN04299488	CCH12-A2	Mycolicibacterium mucogenicum
GCA_001556335.1	LSIR00000000	SAMN04299442	CCH7-A10	Neisseria mucosa
GCA_001556395.1	LSIT00000000	SAMN04299444	CCH10-H12	Neisseria perflava
GCA_001556165.1	LSII00000000	SAMN04299433	CCH6-A12	Neisseria perflava
GCA_001556015.1	LSIA00000000	SAMN04299424	CCH12-A3	Novosphingobium sp. CCH12-A3
GCA_001557375.1	LSKE00000000	SAMN04299481	CCH12-B4	Phenylobacterium sp. CCH12-B4
GCA_001557235.1	LSJI00000000	SAMN04299459	CCH9-H3	Phenylobacterium sp. CCH9-H3
GCA_001556645.1	LSJG00000000	SAMN04299457	CCH7-A1	Porphyrobacter sp. CCH7-A1
GCA_001556105.1	LSIF00000000	SAMN04299429	CCH9-G4	Pseudoxanthomonas mexicana
GCA_001556125.1	LSIG00000000	SAMN04299430	CCH10-E5	Rhizobiales bacterium CCH10-E5
GCA_001556825.1	LSJV00000000	SAMN04299472	CCH11-D2	Rhizobiales bacterium CCH11-D2
GCA_001556855.1	LSJX00000000	SAMN04299474	CCH2-A4	Rhizobiales bacterium CCH2-A4
GCA_001556025.1	LSIB00000000	SAMN04299425	CCH3-A5	Rhizobiales bacterium CCH3-A5
GCA_001557295.1	LSJP00000000	SAMN04299466	CCH6-A4	Rhizobiales bacterium CCH6-A4
GCA_001556775.1	LSJR00000000	SAMN04299468	CCH8-D1	Rhizobiales bacterium CCH8-D1
GCA_001556215.1	LSIK00000000	SAMN04299435	CCH9-A3	Rhizobiales bacterium CCH9-A3
GCA_001557035.1	LSKJ00000000	SAMN04299486	CCH5-H10	Rhodospirillaceae bacterium CCH5-H10
GCA_001556865.1	LSJY00000000	SAMN04299475	CCH11-B1	Sphingobium sp. CCH11-B1
GCA_001556185.1	LSIJ00000000	SAMN04299434	CCH10-B3	Sphingomonas sp. CCH10-B3
GCA_001557105.1	LSKP00000000	SAMN04299492	CCH13-B11	Sphingomonas sp. CCH13-B11
GCA_001557085.1	LSKO00000000	SAMN04299491	CCH15-A1	Sphingomonas sp. CCH15-A1
GCA_001557005.1	LSKG00000000	SAMN04299483	CCH15-F11	Sphingomonas sp. CCH15-F11
GCA_001556095.1	LSIE00000000	SAMN04299428	CCH16-B10	Sphingomonas sp. CCH16-B10
GCA_001555895.1	LSHT00000000	SAMN04299416	CCH18-B1	Sphingomonas sp. CCH18-B1
GCA_001557405.1	LSKI00000000	SAMN04299485	CCH18-H6	Sphingomonas sp. CCH18-H6
GCA_001556975.1	LSKD00000000	SAMN04299480	CCH19-C6	Sphingomonas sp. CCH19-C6
GCA_001556565.1	LSJC00000000	SAMN04299453	CCH20-B6	Sphingomonas sp. CCH20-B6
GCA_001555965.1	LSHX00000000	SAMN04299421	CCH21-G11	Sphingomonas sp. CCH21-G11
GCA_001555785.1	LSHQ00000000	SAMN04299413	CCH5-A5	Sphingomonas sp. CCH5-A5
GCA_001557395.1	LSKH00000000	SAMN04299484	CCH5-D11	Sphingomonas sp. CCH5-D11
GCA_001557215.1	LSJM00000000	SAMN04299463	CCH9-E2	Sphingomonas sp. CCH9-E2
GCA_001556735.1	LSJO00000000	SAMN04299465	CCH9-F2	Sphingomonas sp. CCH9-F2
GCA_001556635.1	LSJF00000000	SAMN04299456	CCH9-H8	Sphingomonas sp. CCH9-H8
GCA_001556435.1	LSIW00000000	SAMN04299447	CCH5-D3	Streptococcus sp. CCH5-D3
GCA_001557225.1	LSJN00000000	SAMN04299464	CCH8-C6	Streptococcus sp. CCH8-C6
GCA_001556605.1	LSJE00000000	SAMN04299455	CCH8-G7	Streptococcus sp. CCH8-G7
GCA_001556505.1	LSIZ00000000	SAMN04299450	CCH8-H5	Streptococcus sp. CCH8-H5
GCA_001556675.1	LSJH00000000	SAMN04299458	CCH5-B3	Xylophilus ampelinus

SRA Data Details

Parameter	Value
Data volume, Gbases	25
Data volume, Mbytes	17372

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