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Links from Nucleotide

Accession: PRJNA283298 ID: 283298

anaerobic digester metagenome

Anaerobic digestion (biogas) Metagenomic assembly

Thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)
AccessionPRJNA283298
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismanaerobic digester metagenome[Taxonomy ID: 1263854]
unclassified sequences; metagenomes; ecological metagenomes; anaerobic digester metagenome
PublicationsCampanaro S et al., "Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.", Biotechnol Biofuels, 2016;9:26
Grants
  • "SYMBIO – Integration of biomass and wind power for biogas enhancement and upgrading via hydrogen assisted anaerobic digestion" (Grant ID 12-132654, Danish Council for Strategic Research)
SubmissionRegistration date: 12-Jan-2016
Technical University of Denmark
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8601
WGS master59
SRA Experiments38
Publications
PubMed1
PMC1
Other datasets
BioSample83
Assembly59
Assembly details:
Assembly levelNumber of Assemblies
59
59
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001512985.1ScaffoldLFRX00000000SAMN03776757
DTU056
GCA_001512995.1ScaffoldLFRY00000000SAMN03778949
DTU067
GCA_001512455.1ScaffoldLFRT00000000SAMN03778949
DTU067
GCA_001513225.1ScaffoldLFTA00000000SAMN03779021
DTU041
GCA_001513185.1ScaffoldLFST00000000SAMN03777427
DTU015
GCA_001512375.1ScaffoldLFRN00000000SAMN03776724
DTU006
GCA_001512605.1ScaffoldLFSU00000000SAMN03777429
DTU014
GCA_001512835.1ScaffoldLFRQ00000000SAMN03778952
DTU022
GCA_001513145.1ScaffoldLFSP00000000SAMN03777414
DTU025
GCA_001513125.1ScaffoldLFSN00000000SAMN03778954
DTU030
GCA_001512545.1ScaffoldLFSI00000000SAMN03777436
DTU065
GCA_001513545.1ScaffoldLFTQ00000000SAMN03794763
DTU068
GCA_001513395.1ScaffoldLFTP00000000SAMN03794754
DTU080
GCA_001512905.1ScaffoldLFTB00000000SAMN03779014
DTU084
GCA_001512425.1ScaffoldLFRR00000000SAMN03778951
DTU054
GCA_001512555.1ScaffoldLFSK00000000SAMN03779019
DTU059
GCA_001512505.1ScaffoldLFSC00000000SAMN03776770
DTU079
GCA_001512825.1ScaffoldLFSX00000000SAMN03779015
DTU010
GCA_001513205.1ScaffoldLFSW00000000SAMN03777431
DTU012
GCA_001512805.1ScaffoldLFSV00000000SAMN03779020
DTU013
GCA_001512945.1ScaffoldLFTF00000000SAMN03778992
DTU023
GCA_001513425.1ScaffoldLFTR00000000SAMN03794761
DTU024
GCA_001512745.1ScaffoldLFSM00000000SAMN03778991
DTU032
GCA_001513365.1ScaffoldLFTH00000000SAMN03794748
DTU033
GCA_001513255.1ScaffoldLFTG00000000SAMN03794751
DTU035
GCA_001512625.1ScaffoldLFTD00000000SAMN03779022
DTU036
GCA_001512765.1ScaffoldLFSO00000000SAMN03777428
DTU053
GCA_001512725.1ScaffoldLFSL00000000SAMN03777438
DTU058
GCA_001513385.1ScaffoldLFTK00000000SAMN03794752
DTU064
GCA_001512485.1ScaffoldLFRV00000000SAMN03777541
DTU069
GCA_001513105.1ScaffoldLFSH00000000SAMN03776849
DTU070
GCA_001512685.1ScaffoldLFSG00000000SAMN03776843
DTU072
GCA_001512665.1ScaffoldLFSF00000000SAMN03776771
DTU073
GCA_001513075.1ScaffoldLFSE00000000SAMN03778993
DTU074
GCA_001513065.1ScaffoldLFSD00000000SAMN03779018
DTU075
GCA_001513305.1ScaffoldLFTJ00000000SAMN03794753
DTU078
GCA_001512915.1ScaffoldLFTC00000000SAMN03777437
DTU083
GCA_001513335.1ScaffoldLFTO00000000SAMN03794755
DTU086
GCA_001513495.1ScaffoldLFTN00000000SAMN03794756
DTU087
GCA_001513045.1ScaffoldLFSB00000000SAMN03777430
DTU089
GCA_001513505.1ScaffoldLFTM00000000SAMN03794757
DTU092
GCA_001513025.1ScaffoldLFRZ00000000SAMN03776769
DTU037
GCA_001513435.1ScaffoldLFTS00000000SAMN03794759
DTU040
GCA_001512435.1ScaffoldLFRS00000000SAMN03778950
DTU029
GCA_001512385.1ScaffoldLFRO00000000SAMN03776756
DTU007
GCA_001512965.1ScaffoldLFRW00000000SAMN03787326
DTU008
GCA_001512365.1ScaffoldLFRP00000000SAMN03777413
DTU009
GCA_001512635.1ScaffoldLFSA00000000SAMN03778953
DTU098
GCA_001513245.1ScaffoldLFTE00000000SAMN03779017
DTU027
GCA_001512885.1ScaffoldLFSZ00000000SAMN03779016
DTU001
GCA_001512865.1ScaffoldLFSY00000000SAMN03779008
DTU002
GCA_001513285.1ScaffoldLFTI00000000SAMN03794740
DTU049
GCA_001513155.1ScaffoldLFSR00000000SAMN03777425
DTU018
GCA_001512785.1ScaffoldLFSQ00000000SAMN03779013
DTU019
GCA_001512495.1ScaffoldLFRU00000000SAMN03778948
DTU052
GCA_001512575.1ScaffoldLFSS00000000SAMN03778948
DTU052
GCA_001512695.1ScaffoldLFSJ00000000SAMN03778995
DTU063
GCA_001513315.1ScaffoldLFTL00000000SAMN03794760
DTU111
GCA_001513565.1ScaffoldLFRM00000000SAMN03654438
-
SRA Data Details
ParameterValue
Data volume, Gbases134
Data volume, Mbytes75246

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