anaerobic digester metagenome (ID 283298) - BioProject

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Accession: PRJNA283298 ID: 283298

anaerobic digester metagenome

Anaerobic digestion (biogas) Metagenomic assembly

Thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

Accession	PRJNA283298
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	anaerobic digester metagenome[Taxonomy ID: 1263854] unclassified sequences; metagenomes; ecological metagenomes; anaerobic digester metagenome
Publications	Campanaro S et al., "Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.", Biotechnol Biofuels, 2016;9:26
Grants	"SYMBIO – Integration of biomass and wind power for biogas enhancement and upgrading via hydrogen assisted anaerobic digestion" (Grant ID 12-132654, Danish Council for Strategic Research)
Submission	Registration date: 12-Jan-2016 Technical University of Denmark
Related Resources	Symbio project website
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8601
WGS master	59
SRA Experiments	38
Publications
PubMed	1
PMC	1
Other datasets
BioSample	83
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

59
59

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001512985.1	LFRX00000000	SAMN03776757	DTU056	Acholeplasmatales bacterium DTU056
GCA_001512995.1	LFRY00000000	SAMN03778949	DTU067	Acholeplasmatales bacterium DTU067
GCA_001512455.1	LFRT00000000	SAMN03778949	DTU067	Acholeplasmatales bacterium DTU067
GCA_001513225.1	LFTA00000000	SAMN03779021	DTU041	Alcaligenaceae bacterium DTU041
GCA_001513185.1	LFST00000000	SAMN03777427	DTU015	Candidatus Fermentithermobacillaceae bacterium DTU015
GCA_001512375.1	LFRN00000000	SAMN03776724	DTU006	Candidatus Methanoculleus thermohydrogenotrophicum
GCA_001512605.1	LFSU00000000	SAMN03777429	DTU014	Clostridia bacterium DTU014
GCA_001512835.1	LFRQ00000000	SAMN03778952	DTU022	Clostridia bacterium DTU022
GCA_001513145.1	LFSP00000000	SAMN03777414	DTU025	Clostridia bacterium DTU025
GCA_001513125.1	LFSN00000000	SAMN03778954	DTU030	Clostridia bacterium DTU030
GCA_001512545.1	LFSI00000000	SAMN03777436	DTU065	Clostridia bacterium DTU065
GCA_001513545.1	LFTQ00000000	SAMN03794763	DTU068	Clostridia bacterium DTU068
GCA_001513395.1	LFTP00000000	SAMN03794754	DTU080	Clostridia bacterium DTU080
GCA_001512905.1	LFTB00000000	SAMN03779014	DTU084	Clostridia bacterium DTU084
GCA_001512425.1	LFRR00000000	SAMN03778951	DTU054	Clostridiaceae bacterium DTU054
GCA_001512555.1	LFSK00000000	SAMN03779019	DTU059	Clostridiaceae bacterium DTU059
GCA_001512505.1	LFSC00000000	SAMN03776770	DTU079	Clostridiaceae bacterium DTU079
GCA_001512825.1	LFSX00000000	SAMN03779015	DTU010	Clostridiales bacterium DTU010
GCA_001513205.1	LFSW00000000	SAMN03777431	DTU012	Clostridiales bacterium DTU012
GCA_001512805.1	LFSV00000000	SAMN03779020	DTU013	Clostridiales bacterium DTU013
GCA_001512945.1	LFTF00000000	SAMN03778992	DTU023	Clostridiales bacterium DTU023
GCA_001513425.1	LFTR00000000	SAMN03794761	DTU024	Clostridiales bacterium DTU024
GCA_001512745.1	LFSM00000000	SAMN03778991	DTU032	Clostridiales bacterium DTU032
GCA_001513365.1	LFTH00000000	SAMN03794748	DTU033	Clostridiales bacterium DTU033
GCA_001513255.1	LFTG00000000	SAMN03794751	DTU035	Clostridiales bacterium DTU035
GCA_001512625.1	LFTD00000000	SAMN03779022	DTU036	Clostridiales bacterium DTU036
GCA_001512765.1	LFSO00000000	SAMN03777428	DTU053	Clostridiales bacterium DTU053
GCA_001512725.1	LFSL00000000	SAMN03777438	DTU058	Clostridiales bacterium DTU058
GCA_001513385.1	LFTK00000000	SAMN03794752	DTU064	Clostridiales bacterium DTU064
GCA_001512485.1	LFRV00000000	SAMN03777541	DTU069	Clostridiales bacterium DTU069
GCA_001513105.1	LFSH00000000	SAMN03776849	DTU070	Clostridiales bacterium DTU070
GCA_001512685.1	LFSG00000000	SAMN03776843	DTU072	Clostridiales bacterium DTU072
GCA_001512665.1	LFSF00000000	SAMN03776771	DTU073	Clostridiales bacterium DTU073
GCA_001513075.1	LFSE00000000	SAMN03778993	DTU074	Clostridiales bacterium DTU074
GCA_001513065.1	LFSD00000000	SAMN03779018	DTU075	Clostridiales bacterium DTU075
GCA_001513305.1	LFTJ00000000	SAMN03794753	DTU078	Clostridiales bacterium DTU078
GCA_001512915.1	LFTC00000000	SAMN03777437	DTU083	Clostridiales bacterium DTU083
GCA_001513335.1	LFTO00000000	SAMN03794755	DTU086	Clostridiales bacterium DTU086
GCA_001513495.1	LFTN00000000	SAMN03794756	DTU087	Clostridiales bacterium DTU087
GCA_001513045.1	LFSB00000000	SAMN03777430	DTU089	Clostridiales bacterium DTU089
GCA_001513505.1	LFTM00000000	SAMN03794757	DTU092	Clostridiales bacterium DTU092
GCA_001513025.1	LFRZ00000000	SAMN03776769	DTU037	Gammaproteobacteria bacterium DTU037
GCA_001513435.1	LFTS00000000	SAMN03794759	DTU040	Gammaproteobacteria bacterium DTU040
GCA_001512435.1	LFRS00000000	SAMN03778950	DTU029	Halothermothrix sp. DTU029
GCA_001512385.1	LFRO00000000	SAMN03776756	DTU007	Methanoculleus sp. DTU007
GCA_001512965.1	LFRW00000000	SAMN03787326	DTU008	Methanomicrobia archaeon DTU008
GCA_001512365.1	LFRP00000000	SAMN03777413	DTU009	Methanosarcina sp. DTU009
GCA_001512635.1	LFSA00000000	SAMN03778953	DTU098	Pelotomaculum sp. DTU098
GCA_001513245.1	LFTE00000000	SAMN03779017	DTU027	Peptococcaceae bacterium DTU027
GCA_001512885.1	LFSZ00000000	SAMN03779016	DTU001	Rikenellaceae bacterium DTU001
GCA_001512865.1	LFSY00000000	SAMN03779008	DTU002	Rikenellaceae bacterium DTU002
GCA_001513285.1	LFTI00000000	SAMN03794740	DTU049	Rikenellaceae bacterium DTU049
GCA_001513155.1	LFSR00000000	SAMN03777425	DTU018	Syntrophomonas sp. DTU018
GCA_001512785.1	LFSQ00000000	SAMN03779013	DTU019	Syntrophomonas sp. DTU019
GCA_001512575.1	LFSS00000000	SAMN03778948	DTU052	Syntrophothermus sp. DTU052
GCA_001512495.1	LFRU00000000	SAMN03778948	DTU052	Syntrophothermus sp. DTU052
GCA_001512695.1	LFSJ00000000	SAMN03778995	DTU063	Tepidanaerobacter sp. DTU063
GCA_001513315.1	LFTL00000000	SAMN03794760	DTU111	Thermotogaceae bacterium DTU111
GCA_001513565.1	LFRM00000000	SAMN03654438	-	anaerobic digester metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	134
Data volume, Mbytes	75246

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anaerobic digester metagenome

Anaerobic digestion (biogas) Metagenomic assembly

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