Listeria (ID 302599) - BioProject

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Accession: PRJNA302599 ID: 302599

Listeria

Listeria sp. assembly

Assemblies of Listeria sp. genomes for comparative analyses

Accession	PRJNA302599
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Listeria[Taxonomy ID: 1637] Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria
Publications	Burall LS et al., "A clade of Listeria monocytogenes serotype 4b variant strains linked to recent listeriosis outbreaks associated with produce from a defined geographic region in the US.", PLoS One, 2017;12(5):e0176912 Burall LS et al., "Whole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis Outbreaks.", PLoS One, 2016;11(3):e0150797
Submission	Registration date: 23-Dec-2015 FDA
Relevance	Varied

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2412
WGS master	106
SRA Experiments	13
Publications
PubMed	2
PMC	2
Other datasets
BioSample	119
Assembly	106

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

64
42
106

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001482165.1	LNNY00000000	SAMN02769693	MOD1_LS114	Listeria monocytogenes
GCA_001482155.1	LNOB00000000	SAMN02991386	MOD1_LS1000	Listeria monocytogenes
GCA_001482135.1	LNOA00000000	SAMN02991384	MOD1_LS997	Listeria monocytogenes
GCA_001482115.1	LNNZ00000000	SAMN02991383	MOD1_LS996	Listeria monocytogenes
GCA_001482095.1	LNNX00000000	SAMN02991380	MOD1_LS993	Listeria monocytogenes
GCA_001482075.1	LNNV00000000	SAMN02990450	MOD1_LS988	Listeria monocytogenes
GCA_001482055.1	LNNW00000000	SAMN02991379	MOD1_LS990	Listeria monocytogenes
GCA_001482035.1	LNNU00000000	SAMN02769778	MOD1_LS651	Listeria monocytogenes
GCA_001482015.1	LNNT00000000	SAMN02769749	MOD1_LS276	Listeria monocytogenes
GCA_001481995.1	LNNS00000000	SAMN02769748	MOD1_LS275	Listeria monocytogenes
GCA_001481965.1	LNNR00000000	SAMN02769745	MOD1_LS272	Listeria monocytogenes
GCA_001481955.1	LNNQ00000000	SAMN02769744	MOD1_LS271	Listeria monocytogenes
GCA_001481935.1	LNNP00000000	SAMN02769743	MOD1_LS270	Listeria monocytogenes
GCA_001481915.1	LNNO00000000	SAMN02769742	MOD1_LS269	Listeria monocytogenes
GCA_001481885.1	LNNN00000000	SAMN02769741	MOD1_LS268	Listeria monocytogenes
GCA_001481875.1	LNNM00000000	SAMN02769740	MOD1_LS267	Listeria monocytogenes
GCA_001481825.1	LNNL00000000	SAMN02769665	MOD1_LS42	Listeria monocytogenes
GCA_001481805.1	LNOC00000000	SAMN02769664	MOD1_LS41	Listeria monocytogenes
GCA_001481795.1	LNOD00000000	SAMN02769670	MOD1_LS47	Listeria monocytogenes
GCA_001481815.1	LNOE00000000	SAMN02769673	MOD1_LS50	Listeria monocytogenes
GCA_001555605.1	LNPQ00000000	SAMN03278638	FDA824917-7A	Listeria monocytogenes
GCA_001555655.1	LNPN00000000	SAMN03278635	FDA824917-4A	Listeria monocytogenes
GCA_001555535.1	LNPM00000000	SAMN03278634	FDA824917-3A	Listeria monocytogenes
GCA_001555585.1	LNPP00000000	SAMN03278637	FDA824917-6A	Listeria monocytogenes
GCA_001555575.1	LNPO00000000	SAMN03278636	FDA824917-5A	Listeria monocytogenes
GCA_001557605.1	LNSO00000000	SAMN03093481	PNUSAL001024	Listeria monocytogenes
GCA_001557615.1	LNSN00000000	SAMN02854695	PNUSAL000730	Listeria monocytogenes
GCA_001557595.1	LNSM00000000	SAMN03253369	PNUSAL001166	Listeria monocytogenes
GCA_001557705.1	LNSP00000000	SAMN02950476	PNUSAL000870	Listeria monocytogenes
GCA_001557685.1	LNSR00000000	SAMN03278639	FDA824917-10A	Listeria monocytogenes
GCA_001557675.1	LNSQ00000000	SAMN03013698	PNUSAL000957	Listeria monocytogenes
GCA_001557625.1	LNSL00000000	SAMN03253360	PNUSAL001157	Listeria monocytogenes
GCA_002133345.1	MTRO00000000	SAMN04414046	PNUSAL001927	Listeria monocytogenes
GCA_002133315.1	MTRQ00000000	SAMN02358134	PNUSAL000194	Listeria monocytogenes
GCA_002133295.1	MTRR00000000	SAMN06216090	LS411	Listeria monocytogenes
GCA_002133285.1	MTRP00000000	SAMN04417753	PNUSAL001994	Listeria monocytogenes
GCA_002133255.1	MTRN00000000	SAMN04414044	PNUSAL001922	Listeria monocytogenes
GCA_002133245.1	MTRM00000000	SAMN04388368	PNUSAL001996	Listeria monocytogenes
GCA_002133215.1	MTRK00000000	SAMN04396072	PNUSAL001986	Listeria monocytogenes
GCA_002133205.1	MTRL00000000	SAMN04395680	PNUSAL001993	Listeria monocytogenes
GCA_002133175.1	MTRJ00000000	SAMN04396071	PNUSAL001985	Listeria monocytogenes
GCA_002133165.1	MTRI00000000	SAMN04396067	PNUSAL001981	Listeria monocytogenes
GCA_002133145.1	MTRG00000000	SAMN04372563	PNUSAL001937	Listeria monocytogenes
GCA_002133125.1	MTRH00000000	SAMN04372341	PNUSAL001968	Listeria monocytogenes
GCA_002133105.1	MTRF00000000	SAMN04362094	FDA937574-1	Listeria monocytogenes
GCA_002133065.1	MTRE00000000	SAMN04362098	FDA937574-5	Listeria monocytogenes
GCA_002133055.1	MTRD00000000	SAMN04362097	FDA937574-4	Listeria monocytogenes
GCA_002133045.1	MTRC00000000	SAMN04362096	FDA937574-3	Listeria monocytogenes
GCA_002133025.1	MTRB00000000	SAMN04362095	FDA937574-2	Listeria monocytogenes
GCA_002132985.1	MTQY00000000	SAMN04263439	PNUSAL001833	Listeria monocytogenes
GCA_002132975.1	MTJJ00000000	SAMN03218399	FDA878675-2	Listeria monocytogenes
GCA_002132955.1	MTRA00000000	SAMN04287743	PNUSAL001885	Listeria monocytogenes
GCA_002132945.1	MTRS00000000	SAMN03462190	CDPHFDLB-F14M01770.86-1	Listeria monocytogenes
GCA_002132915.1	MTQV00000000	SAMN04148337	CDPHFDLB-F15M03122-2	Listeria monocytogenes
GCA_002132895.1	MTJI00000000	SAMN03218403	FDA752730-2	Listeria monocytogenes
GCA_002132885.1	MTQU00000000	SAMN04147145	PNUSAL001765	Listeria monocytogenes
GCA_002132865.1	MTJH00000000	SAMN03218400	FDA752729-1	Listeria monocytogenes
GCA_002132835.1	MTJG00000000	SAMN03218401	FDA752729-2	Listeria monocytogenes
GCA_002132815.1	MTJF00000000	SAMN03218398	FDA878675-1	Listeria monocytogenes
GCA_002132805.1	MTJE00000000	SAMN03218402	FDA752730-1	Listeria monocytogenes
GCA_002132785.1	MTQS00000000	SAMN04025317	PNUSAL001652	Listeria monocytogenes
GCA_002132765.1	MTQZ00000000	SAMN04287730	PNUSAL001827	Listeria monocytogenes
GCA_002132735.1	MTQX00000000	SAMN04263438	PNUSAL001831	Listeria monocytogenes
GCA_002132715.1	MTQW00000000	SAMN02317151	PNUSAL000113	Listeria monocytogenes
GCA_002132705.1	MTJK00000000	SAMN03299419	FDA895132-2	Listeria monocytogenes
GCA_002132685.1	MTQT00000000	SAMN04102322	PNUSAL001751	Listeria monocytogenes
GCA_002132655.1	MTQR00000000	SAMN03976214	PNUSAL001602	Listeria monocytogenes
GCA_002132645.1	MTQQ00000000	SAMN03976210	PNUSAL001598	Listeria monocytogenes
GCA_002132625.1	MTFD00000000	SAMN04148336	CDPHFDLB-F15M03122-1	Listeria monocytogenes
GCA_002132585.1	MTFC00000000	SAMN03567988	PNUSAL001411	Listeria monocytogenes
GCA_002132575.1	MTFB00000000	SAMN03760843	PNUSAL001067	Listeria monocytogenes
GCA_002132565.1	MTDT00000000	SAMN03253382	PNUSAL001182	Listeria monocytogenes
GCA_002132545.1	MTDU00000000	SAMN03253386	PNUSAL001186	Listeria monocytogenes
GCA_002132515.1	MTDR00000000	SAMN03253377	PNUSAL001177	Listeria monocytogenes
GCA_002132505.1	MTDS00000000	SAMN03253380	PNUSAL001180	Listeria monocytogenes
GCA_002132475.1	MTDQ00000000	SAMN03253354	PNUSAL001151	Listeria monocytogenes
GCA_002132465.1	MTDO00000000	SAMN03067780	PNUSAL000972	Listeria monocytogenes
GCA_002132435.1	MTFH00000000	SAMN02991390	MOD1_LS1005	Listeria monocytogenes
GCA_002132415.1	MTDF00000000	SAMN02990444	MOD1_LS978	Listeria monocytogenes
GCA_002132405.1	MTFF00000000	SAMN02991392	MOD1_LS1008	Listeria monocytogenes
GCA_002132385.1	MTFN00000000	SAMN02990456	MOD1_LS1010	Listeria monocytogenes
GCA_002132365.1	MTFA00000000	SAMN03299420	FDA895132-3	Listeria monocytogenes
GCA_002132335.1	MTDM00000000	SAMN02990452	MOD1_LS992	Listeria monocytogenes
GCA_002132325.1	MTFO00000000	SAMN02991382	MOD1_LS995	Listeria monocytogenes
GCA_002132305.1	MTDJ00000000	SAMN02990445	MOD1_LS979	Listeria monocytogenes
GCA_002132265.1	MTDP00000000	SAMN03067789	PNUSAL000982	Listeria monocytogenes
GCA_002132255.1	MTDW00000000	SAMN03253395	PNUSAL001195	Listeria monocytogenes
GCA_002132245.1	MTDV00000000	SAMN03253388	PNUSAL001188	Listeria monocytogenes
GCA_002132205.1	MTDN00000000	SAMN03013659	PNUSAL000904	Listeria monocytogenes
GCA_002132195.1	MTFI00000000	SAMN02991377	MOD1_LS985	Listeria monocytogenes
GCA_002132185.1	MTFG00000000	SAMN02991378	MOD1_LS989	Listeria monocytogenes
GCA_002132165.1	MTDG00000000	SAMN02990447	MOD1_LS984	Listeria monocytogenes
GCA_002132135.1	MTFP00000000	SAMN02991385	MOD1_LS998	Listeria monocytogenes
GCA_002132125.1	MTDE00000000	SAMN02991388	MOD1_LS1002	Listeria monocytogenes
GCA_002132095.1	MTDH00000000	SAMN02990453	MOD1_LS999	Listeria monocytogenes
GCA_002132085.1	MTEZ00000000	SAMN03299418	FDA895132-1	Listeria monocytogenes
GCA_002132055.1	MTFR00000000	SAMN03277690	NRRL B-33590	Listeria monocytogenes
GCA_002132045.1	MTDI00000000	SAMN02990451	MOD1_LS991	Listeria monocytogenes
GCA_002132025.1	MTFK00000000	SAMN02991394	MOD1_LS1011	Listeria monocytogenes
GCA_002132005.1	MTFJ00000000	SAMN02991389	MOD1_LS1003	Listeria monocytogenes
GCA_002131975.1	MTFM00000000	SAMN02991375	MOD1_LS982	Listeria monocytogenes
GCA_002131965.1	MTFL00000000	SAMN02990455	MOD1_LS1006	Listeria monocytogenes
GCA_002131935.1	MTCL00000000	SAMN03299421	FDA895132-4	Listeria monocytogenes
GCA_002131925.1	MTHA00000000	SAMN01939119	CFSAN002349	Listeria monocytogenes CFSAN002349
GCA_002131895.1	MTDK00000000	SAMN02429381	PNUSAL000441	Listeria monocytogenes
GCA_002131885.1	MTDL00000000	SAMN03253341	PNUSAL001135	Listeria monocytogenes

SRA Data Details

Parameter	Value
Data volume, Gbases	4
Data volume, Mbytes	2886

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Listeria

Listeria sp. assembly

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