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Accession: PRJNA257433 ID: 257433

Trichinella

Annotated genomic assembly for each of the sixteen Trichinella species and genotypes

Evolutionary studies of Trichinella species and genotypes.

Accession	PRJNA257433
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Trichinella[Taxonomy ID: 6333] Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella
Publications	Korhonen PK et al., "Phylogenomic and biogeographic reconstruction of the Trichinella complex.", Nat Commun, 2016 Feb 1;7:10513
Submission	Registration date: 24-Nov-2015 University of Melbourne
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	40521
WGS master	16
TSA master	15
SRA Experiments	63
Protein Sequences	286250
Publications
PubMed	1
PMC	1
Other datasets
BioSample	16
Assembly	16

Assembly details:

Assembly level

Number of Assemblies

Scaffold

16
16

Assembly	Level	WGS	BioSample	Isolate	Taxonomy
GCA_001447585.1		JYDI00000000	SAMN02949469	ISS120	Trichinella britovi
GCA_001447425.1		JYDJ00000000	SAMN02949480	ISS417	Trichinella murrelli
GCA_001447565.2		JYDW00000000	SAMN02949468	ISS10	Trichinella nativa
GCA_001447455.1		JYDL00000000	SAMN02949482	ISS37	Trichinella nelsoni
GCA_001447755.1		JYDO00000000	SAMN02949504	ISS1980	Trichinella papuae
GCA_001447655.1		JYDQ00000000	SAMN02949507	ISS2496	Trichinella patagoniensis
GCA_001447645.1		JYDV00000000	SAMN02949477	ISS176 (KAZ)	Trichinella pseudospiralis
GCA_001447725.1		JYDS00000000	SAMN02949479	ISS588 (KAM)	Trichinella pseudospiralis
GCA_001447575.1		JYDT00000000	SAMN02949478	ISS470 (USA)	Trichinella pseudospiralis
GCA_001447675.1		JYDR00000000	SAMN02949476	ISS13 (GAR)	Trichinella pseudospiralis
GCA_001447445.1		JYDU00000000	SAMN02949470	ISS141	Trichinella pseudospiralis
GCA_001447435.1		JYDK00000000	SAMN02949481	ISS34	Trichinella sp. T6
GCA_001447745.1		JYDM00000000	SAMN02949483	ISS272	Trichinella sp. T8
GCA_001447505.1		JYDN00000000	SAMN02949488	ISS409	Trichinella sp. T9
GCA_001447595.1		JYDH00000000	SAMN02949466	ISS3 (POL-1)	Trichinella spiralis
GCA_001447665.1		JYDP00000000	SAMN02949506	ISS1029	Trichinella zimbabwensis

SRA Data Details

Parameter	Value
Data volume, Gbases	379
Data volume, Tbytes	0.25

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WGS master
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LinkOut to external resources

SILVA LSU Database [SILVA]
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Trichinella
Trichinella
Annotated genomic assembly for each of the sixteen Trichinella species and genotypes

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