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Links from Nucleotide

Accession: PRJNA179436 ID: 179436

Burkholderia

Burkholderia Genome sequencing and assembly

See Genome Information for Burkholderia pseudomallei
Comparative genomic analysis of geographically and phenotypically diverse strains of Burkholderia pseudomallei, the cause of meliodosis.
AccessionPRJNA179436
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismBurkholderia[Taxonomy ID: 32008]
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia
Publications
  • Spring-Pearson SM et al., "Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.", PLoS One, 2015;10(10):e0140274
  • Gee JE et al., "Burkholderia pseudomallei type G in Western Hemisphere.", Emerg Infect Dis, 2014 Apr;20(4):682-4
Grants
  • "Genomic Sequencing" (Grant ID CB2847, Defense Threat Reduction Agency)
SubmissionRegistration date: 25-Apr-2014
US Army Edgewood Chemical Biological Center
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)14931
WGS master66
Publications
PubMed2
PMC2
Other datasets
BioSample66
Assembly66
Assembly details:
Assembly levelNumber of Assemblies
66
66
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_002888095.1ContigJAVA00000000SAMN02443754
MSMB122
GCA_002888035.1ContigJAUY00000000SAMN02443752
MSMB121
GCA_002888055.1ContigJAUW00000000SAMN02443750
MSHR146
GCA_002888015.1ContigJAUU00000000SAMN02443748
MSHR491
GCA_002887975.1ContigJAUS00000000SAMN02443746
MSHR730
GCA_002887965.1ContigJAUR00000000SAMN02443745
MSHR338
GCA_002887955.1ContigJAUT00000000SAMN02443747
MSHR2543
GCA_002887935.1ContigJAUQ00000000SAMN02443744
Gu2143a
GCA_002887895.1ContigJAUO00000000SAMN02443742
DL36
GCA_002887875.1ContigJAUL00000000SAMN02443739
MSHR487
GCA_002887885.1ContigJAUP00000000SAMN02443743
MSHR139
GCA_002887855.1ContigJAUM00000000SAMN02443740
MSHR503
GCA_002887835.1ContigJAUK00000000SAMN02443738
MSHR296
GCA_002888275.1ContigJAVV00000000SAMN02443775
MSHR2053
GCA_002888285.1ContigJAVZ00000000SAMN02443779
MSHR1079
GCA_002888255.1ContigJAVX00000000SAMN02443777
INT2-Bp91
GCA_002888195.1ContigJAVR00000000SAMN02443771
MSHR840
GCA_002888365.1ContigJAVY00000000SAMN02443778
INT2-Bp184
GCA_002888045.1ContigJAUV00000000SAMN02443749
MSHR511
GCA_002888155.1ContigJAVO00000000SAMN02443768
NAU14B1
GCA_002888135.1ContigJAVJ00000000SAMN02443763
INT4-Bp18
GCA_002888115.1ContigJAVC00000000SAMN02443756
DL28
GCA_002881135.1ContigJAVU00000000SAMN02443774
MSHR952
GCA_002881115.1ContigJAVW00000000SAMN02443776
INT2-Bp24
GCA_002881075.1ContigJAVM00000000SAMN02443766
Smith 002025
GCA_002881055.1ContigJAVN00000000SAMN02443767
NAU2B9
GCA_002881035.1ContigJAVL00000000SAMN02443765
USAMRU Malaysia #17
GCA_002881015.1ContigJAVK00000000SAMN02443764
STW 214
GCA_002880965.1ContigJAVI00000000SAMN02443762
DL34
GCA_002880985.1ContigJAVH00000000SAMN02443761
DL17
GCA_002880955.1ContigJAVG00000000SAMN02443760
MSHR87
GCA_002880925.1ContigJAVF00000000SAMN02443759
DL35
GCA_002880915.1ContigJAVE00000000SAMN02443758
DL2
GCA_002880855.1ContigJAUZ00000000SAMN02443753
319a
GCA_002880835.1ContigJAUX00000000SAMN02443751
NAU35A3
GCA_002880845.1ContigJAVD00000000SAMN02443757
MSHR800
GCA_001446175.1ContigARZW00000000SAMN02044391
Songkhla34W2
GCA_001446155.1ContigARZV00000000SAMN02044390
RNS7Bp6
GCA_001446125.1ContigARZU00000000SAMN02044389
RNS3Bp1
GCA_001446115.1ContigARZT00000000SAMN02044388
RF85Bp37
GCA_001446095.1ContigARZP00000000SAMN02044384
PHLS9
GCA_001446075.1ContigARZN00000000SAMN02044382
NCTC 13179
GCA_001446055.1ContigARZM00000000SAMN02044381
NCTC 13178
GCA_001446035.1ContigARZL00000000SAMN02044380
NAU44A6
GCA_001445985.1ContigARZJ00000000SAMN02044378
NAU20B16
GCA_001446005.1ContigARZK00000000SAMN02044379
NAU24B3
GCA_001445975.1ContigARZI00000000SAMN02044377
NAU14B6
GCA_001445955.1ContigARZF00000000SAMN02044376
MSHR465a
GCA_001445915.1ContigARZR00000000SAMN02044386
RF6BP15
GCA_001445925.1ContigARZS00000000SAMN02044387
NRF80Bp1
GCA_001445855.1ContigARZG00000000SAMN02044374
Gu1909a
GCA_001445865.1ContigARZH00000000SAMN02044375
MSHR1950
GCA_001445875.1ContigARZQ00000000SAMN02044385
RF67BP1
GCA_001445635.1ContigJAUN00000000SAMN02443741
RF43Bp22
GCA_000648355.1ContigARZE00000000SAMN02044373
4900CFPatient1
GCA_000648335.1ContigARZO00000000SAMN02044383
PB08298010
GCA_002881095.1ContigJAVP00000000SAMN02443769
MSMB175
GCA_002888355.1ContigJAWB00000000SAMN02443781
Phuket 4W-1
GCA_002888335.1ContigJAWC00000000SAMN02443782
E254
GCA_002888315.1ContigJAWA00000000SAMN02443780
2002721643
GCA_002888205.1ContigJAVT00000000SAMN02443773
E0444
GCA_002888425.1ContigJAWE00000000SAMN02443784
TXDOH
GCA_002888395.1ContigJAWD00000000SAMN02443783
H0587
GCA_002888235.1ContigJAVS00000000SAMN02443772
2002721723
GCA_002888175.1ContigJAVQ00000000SAMN02443770
MSMB57
GCA_002880865.1ContigJAVB00000000SAMN02443755
MSMB153

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