soil metagenome (ID 298127) - BioProject

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Accession: PRJNA298127 ID: 298127

soil metagenome

Arabidopsis thaliana soil-derived microbiota culture collections Genome sequencing and assembly

Arabidopsis leaf- and root-derived microbiota culture collections representing the majority of bacterial species that are reproducibly detectable by culture-independent community sequencing.

Accession	PRJNA298127
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soil metagenome[Taxonomy ID: 410658] unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
Publications	Bai Y et al., "Functional overlap of the Arabidopsis leaf and root microbiota.", Nature, 2015 Dec 17;528(7582):364-9
Submission	Registration date: 2-Nov-2015 ETH Zurich
Related Resources	ATSPHERE website
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	981
WGS master	32
Protein Sequences	141347
Publications
PubMed	1
Other datasets
BioSample	32
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

26
6
32

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001428255.1	LMRW00000000	SAMN04155655	Soil535	Agromyces sp. Soil535
GCA_001428005.1	LMSB00000000	SAMN04155660	Soil736	Arthrobacter sp. Soil736
GCA_001428325.1	LMSF00000000	SAMN04155665	Soil761	Arthrobacter sp. Soil761
GCA_001428335.1	LMSG00000000	SAMN04155666	Soil762	Arthrobacter sp. Soil762
GCA_001428365.1	LMSH00000000	SAMN04155667	Soil763	Arthrobacter sp. Soil763
GCA_001428075.1	LMSI00000000	SAMN04155668	Soil764	Arthrobacter sp. Soil764
GCA_001428435.1	LMSO00000000	SAMN04155675	Soil782	Arthrobacter sp. Soil782
GCA_001429825.1	LMSY00000000	SAMN04155654	Soil531	Bacillus sp. Soil531
GCA_001429835.1	LMSZ00000000	SAMN04155661	Soil745	Bacillus sp. Soil745
GCA_001429855.1	LMTA00000000	SAMN04155670	Soil768D1	Bacillus sp. Soil768D1
GCA_001428405.1	LMSL00000000	SAMN04155672	Soil773	Frateuria sp. Soil773
GCA_001428305.1	LMRZ00000000	SAMN04155658	Soil728	Janibacter sp. Soil728
GCA_001427985.1	LMSA00000000	SAMN04155659	Soil729	Knoellia sp. Soil729
GCA_001428285.1	LMRX00000000	SAMN04155656	Soil538	Mycobacterium sp. Soil538
GCA_001428125.1	LMSM00000000	SAMN04155673	Soil774	Nocardioides sp. Soil774
GCA_001428425.1	LMSN00000000	SAMN04155674	Soil777	Nocardioides sp. Soil777
GCA_001429525.1	LMSQ00000000	SAMN04155677	Soil796	Nocardioides sp. Soil796
GCA_001429555.1	LMSR00000000	SAMN04155678	Soil797	Nocardioides sp. Soil797
GCA_001429625.1	LMSU00000000	SAMN04155681	Soil805	Nocardioides sp. Soil805
GCA_001428065.1	LMSE00000000	SAMN04155664	Soil756	Nostocoides sp. Soil756
GCA_001428245.1	LMRV00000000	SAMN04155653	Soil522	Paenibacillus sp. Soil522
GCA_001427935.1	LMRY00000000	SAMN04155657	Soil724D2	Paenibacillus sp. Soil724D2
GCA_001428045.1	LMSD00000000	SAMN04155663	Soil750	Paenibacillus sp. Soil750
GCA_001428105.1	LMSJ00000000	SAMN04155669	Soil766	Paenibacillus sp. Soil766
GCA_001429545.1	LMSP00000000	SAMN04155676	Soil787	Paenibacillus sp. Soil787
GCA_001428025.1	LMSC00000000	SAMN04155662	Soil748	Phycicoccus sp. Soil748
GCA_001429605.1	LMSS00000000	SAMN04155679	Soil802	Phycicoccus sp. Soil802
GCA_001429685.1	LMST00000000	SAMN04155680	Soil803	Phycicoccus sp. Soil803
GCA_001428385.1	LMSK00000000	SAMN04155671	Soil772	Rhodanobacter sp. Soil772
GCA_001429645.1	LMSW00000000	SAMN04155683	Soil810	Terrabacter sp. Soil810
GCA_001429655.1	LMSX00000000	SAMN04155684	Soil811	Terrabacter sp. Soil811
GCA_001429705.1	LMSV00000000	SAMN04155682	Soil809	Yonghaparkia sp. Soil809

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soil metagenome

Arabidopsis thaliana soil-derived microbiota culture collections Genome sequencing and assembly

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