Citrobacter freundii strain:RU2 (ID 252011) - BioProject

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Accession: PRJNA252011 ID: 252011

Citrobacter freundii strain:RU2

Citrobacter freundii RU2 Genome sequencing

See Genome Information for Citrobacter freundii

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This project is a component of the Genomic analysis of bacterial domestication

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166 additional projects are related by organism.

1 additional project is a component of the Genomic analysis of bacterial domestication.

Minimally passaged isolates from healthy human volunteers were used for an experimental evolution study of adaptation under weak selection in rich laboratory media. Isolates were sequenced as single clones, derived populations as whole populations.

Accession	PRJNA252011
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Citrobacter freundii[Taxonomy ID: 546] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter freundii
Publications	Saxer G et al., "Mutations in global regulators lead to metabolic selection during adaptation to complex environments.", PLoS Genet, 2014 Dec;10(12):e1004872
Submission	Registration date: 26-Oct-2015 US Army Edgewood Chemical Biological Center
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3696
WGS master	25
SRA Experiments	26
Publications
PubMed	1
PMC	1
Other datasets
BioSample	25
Assembly	25

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

13
12
25

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001413335.1	JRTP00000000	SAMN02872798	RU2 BHI22	Citrobacter freundii
GCA_001413315.1	JRTO00000000	SAMN02872797	RU2 BHI21	Citrobacter freundii
GCA_001413295.1	JRTM00000000	SAMN02872795	RU2 BHI19	Citrobacter freundii
GCA_001412875.1	JRTR00000000	SAMN02872800	RU2 BHI24	Citrobacter freundii
GCA_001412855.1	JRTQ00000000	SAMN02872799	RU2 BHI23	Citrobacter freundii
GCA_001412825.1	JRTN00000000	SAMN02872796	RU2 BHI20	Citrobacter freundii
GCA_001412815.1	JRTJ00000000	SAMN02872792	RU2 BHI16	Citrobacter freundii
GCA_001412795.1	JRTH00000000	SAMN02872790	RU2 BHI14	Citrobacter freundii
GCA_001412755.1	JRTF00000000	SAMN02872776	RU2 LB36	Citrobacter freundii
GCA_001412725.1	JRSV00000000	SAMN02872766	RU2 LB26	Citrobacter freundii
GCA_001412735.1	JRSY00000000	SAMN02872769	RU2 LB29	Citrobacter freundii
GCA_001412715.1	JRST00000000	SAMN02872722	RU2	Citrobacter freundii
GCA_001413275.1	JRTL00000000	SAMN02872794	RU2 BHI18	Citrobacter freundii
GCA_001413255.1	JRTK00000000	SAMN02872793	RU2 BHI17	Citrobacter freundii
GCA_001413235.1	JRTI00000000	SAMN02872791	RU2 BHI15	Citrobacter freundii
GCA_001413215.1	JRTG00000000	SAMN02872789	RU2 BHI13	Citrobacter freundii
GCA_001413195.1	JRTE00000000	SAMN02872775	RU2 LB35	Citrobacter freundii
GCA_001413165.1	JRTD00000000	SAMN02872774	RU2 LB34	Citrobacter freundii
GCA_001413155.1	JRTC00000000	SAMN02872773	RU2 LB33	Citrobacter freundii
GCA_001413125.1	JRTA00000000	SAMN02872771	RU2 LB31	Citrobacter freundii
GCA_001413115.1	JRTB00000000	SAMN02872772	RU2 LB32	Citrobacter freundii
GCA_001413095.1	JRSZ00000000	SAMN02872770	RU2 LB30	Citrobacter freundii
GCA_001413075.1	JRSX00000000	SAMN02872768	RU2 LB28	Citrobacter freundii
GCA_001413045.1	JRSW00000000	SAMN02872767	RU2 LB27	Citrobacter freundii
GCA_001413035.1	JRSU00000000	SAMN02872765	RU2 LB25	Citrobacter freundii

SRA Data Details

Parameter	Value
Data volume, Gbases	91
Data volume, Mbytes	61091

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Citrobacter freundii strain:RU2

Citrobacter freundii RU2 Genome sequencing

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