ID 257008 - BioProject

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Accession: PRJNA257008 ID: 257008

Consortium for Microbial Forensics and Genomics (µFORGE): Capturing Global Biodiversity of Pathogens

The purpose of this BioProject is to prepare high quality genome sequences of various human, animal, and plant pathogens that will support microbial forensics, biosurveillance and public health

Accession	PRJNA257008
Data Type	Genome sequencing and assembly
Scope	Multispecies
Keyword	GMI
Publications	Chen R et al., "Comprehensive Genome Scale Phylogenetic Study Provides New Insights on the Global Expansion of Chikungunya Virus.", J Virol, 2016 Dec 1;90(23):10600-10611
Grants	"µFORGE, : Capturing Global Biodiversity of Pathogens by Whole Genome Sequencing" (Grant ID HSHQDC-13-C-B0009, Department of Homeland Security)
Submission	Registration date: 29-Jul-2014 µFORGE - MRIGlobal - cBio Corp
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6658
WGS master	52
Genomic DNA	9
Genomic RNA	126
SRA Experiments	148
Protein Sequences	208967
Publications
PubMed	1
PMC	1
Other datasets
BioSample	195
Assembly	57

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

4
52
56

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_000875715.1		3	SAMN02999504	A1144	Bacillus anthracis
GCA_000986915.1	LAKZ00000000		SAMN02999502	A1039	Bacillus anthracis
GCA_000986935.1	LBFE00000000	2	SAMN02999503	A1075	Bacillus anthracis
GCA_001276995.1	LHUO00000000		SAMN03862112	A0389	Bacillus anthracis
GCA_001277085.1	LHUN00000000		SAMN03862113	A0021	Bacillus anthracis
GCA_001273145.1	LGID00000000		SAMN03757453	PAK-1	Bacillus anthracis
GCA_001273125.1	LGIG00000000		SAMN03757461	K8215	Bacillus anthracis
GCA_001273105.1	LGIF00000000		SAMN03757460	K1129	Bacillus anthracis
GCA_001273085.1	LGIE00000000		SAMN03757459	K3974	Bacillus anthracis
GCA_001273065.1	LFYJ00000000		SAMN03757458	K4834	Bacillus anthracis
GCA_001273045.1	LFYI00000000		SAMN03757457	K0021	Bacillus anthracis
GCA_001273025.1	LFYH00000000		SAMN03757456	K2883	Bacillus anthracis
GCA_001273005.1	LFYG00000000		SAMN03757455	K2129	Bacillus anthracis
GCA_001272985.1	LFYF00000000		SAMN03757454	K1285	Bacillus anthracis
GCA_001608355.1	LUFL00000000		SAMN04260152	BRUC048	Brucella melitensis
GCA_001608425.1	LUFK00000000		SAMN04260151	BRUC101	Brucella melitensis
GCA_000988815.1	LBFG00000000		SAMN03418620	Human/CT/US/1995	Brucella melitensis
GCA_000875695.1		2	SAMN03292446	Human/AR/US/1981	Brucella suis
GCA_001608365.1	LUFP00000000		SAMN04260156	102	Burkholderia mallei
GCA_001608345.1	LUFQ00000000		SAMN04260157	Budapest	Burkholderia mallei
GCA_001608335.1	LUFO00000000		SAMN04260155	Kweiyang#4	Burkholderia mallei
GCA_001608415.1	LUFM00000000		SAMN04260153	BURK081	Burkholderia mallei
GCA_001608455.1	LUFN00000000		SAMN04260154	BURK080	Burkholderia mallei
GCA_000986905.1	LBFF00000000		SAMN03418621	Ivan	Burkholderia mallei
GCA_000986925.1	LBFH00000000	1	SAMN03418622	Walls 8G	Clostridium botulinum
GCA_001276985.1	LHUL00000000		SAMN03862115	ATCC 25763	Clostridium botulinum
GCA_001276965.1	LHUM00000000		SAMN03862114	ATCC 17786	Clostridium botulinum
GCA_001273165.1	LGIH00000000		SAMN03787459	ATCC 17843	Clostridium botulinum
GCA_001273275.1	LGIL00000000		SAMN03787463	ATCC 7949	Clostridium botulinum
GCA_001273255.1	LGIK00000000		SAMN03787462	ATCC 17862	Clostridium botulinum
GCA_001273225.1	LGIJ00000000		SAMN03787461	ATCC 9564	Clostridium botulinum
GCA_001273195.1	LGII00000000		SAMN03787460	ATCC 23387	Clostridium botulinum
GCA_001608495.1	LUFS00000000		SAMN04335506	Palm River	Ehrlichia ruminantium
GCA_001608445.1	LUFR00000000		SAMN04328139	CCUG 58020	Francisella hispaniensis FSC454
GCA_001696955.1	LVKZ00000000		SAMN04260150	MAX	Francisella tularensis
GCA_001696935.1	LVKW00000000		SAMN04260147	RUSS	Francisella tularensis
GCA_001696945.1	LVKY00000000		SAMN04260149	O'HARA	Francisella tularensis
GCA_001696925.1	LVKX00000000		SAMN04260148	503	Francisella tularensis
GCA_001696845.1	LVKU00000000		SAMN04216072	UW491	Ralstonia solanacearum
GCA_001696865.1	LVKS00000000		SAMN04216070	UW365	Ralstonia solanacearum
GCA_001696875.1	LVKV00000000		SAMN04216073	UW551	Ralstonia solanacearum
GCA_001696855.1	LVKT00000000		SAMN04216071	UW24	Ralstonia solanacearum
GCA_000986985.1	LBFI00000000		SAMN03418623	FH142	Rathayibacter toxicus
GCA_000875675.1		1	SAMN03292448	70137	Rathayibacter toxicus
GCA_001602215.1		1	SAMN04216069	Naples-1	Rickettsia prowazekii
GCA_001277095.1	LHUI00000000		SAMN03862118	CFPB1947	Xanthomonas oryzae
GCA_001277055.1	LHUH00000000		SAMN03862119	CIX44	Xanthomonas oryzae
GCA_001277045.1	LHUJ00000000		SAMN03862117	X11-5A	Xanthomonas oryzae
GCA_001549745.1	LRVF00000000	4	SAMN03862121	CVC0256	Xylella fastidiosa
GCA_001549825.1	LRVJ00000000	4	SAMN03862125	COF0407	Xylella fastidiosa
GCA_001549765.1	LRVE00000000	4	SAMN03862120	CVC0251	Xylella fastidiosa
GCA_001549815.1	LRVG00000000	4	SAMN03862122	COF0324	Xylella fastidiosa
GCA_001549735.1	LRVH00000000	4	SAMN03862123	OLS0479	Xylella fastidiosa
GCA_001549755.1	LRVI00000000	2	SAMN03862124	OLS0478	Xylella fastidiosa
GCA_000986995.1	LBFJ00000000	1	SAMN02999506	ZE94-2122	Yersinia pestis subsp. pestis bv. Orientalis
GCA_000987005.3	LBFK00000000	1	SAMN03418619	125 B plague Bombay	Yersinia pestis

SRA Data Details

Parameter	Value
Data volume, Gbases	330
Data volume, Tbytes	0.21

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Consortium for Microbial Forensics and Genomics (µFORGE): Capturing Global Biodiversity of Pathogens

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